Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01015 ATGGAGAAATCAAGGCCTTCAGACCAAGTTGTTCTCTTCATCGACCAACATAATCCTAAGCCATCATCCATGGAAGCCGAAAATCATCAAGAGAAACCCAGACACCCCATAAAAGTCAAAACCCTTAACCGTCTCAATTTCTCAAAACCCAAATCCCGAATCCAAGAGTACAACTATATTCCCCGGAACAAGCTTGCAGCCGCTAAAGAAGAAGATGACATTATCCAACCCACCTACAAGCTCACTTCCAATGAAGAAGACGACGAGGAAGATGACTGGAAATGGGACAAGGAAGAGATGGAAGAGGATGGCTCAGAGCATAACACAACATTGCACCAGAAGAAGAGGTTCAGAGTCAAGTGGAGGCTCGTGATGGAGTGGGCTTTGTTCCTCAATATATTGGCATCCTTGGTGTGTTCTTTGACCATATCTTCCATAACCAACATGCACGTGCTGGGATTGGAGATTTGGAGGTGGTGTGTCATGATAATGGTTACATTCAGTGGTCGTCTGGTTTCAGTGTTCTTCCTTGAACGAAACTTCATGCTAAGGGATAAGGTGCTGTACTTCATCTACGGGCTTAGGAAGAGCATAAGAAACTGTTTGTGGTTAGGTCTGGTGTTACTCTCCTACTGGAGCTTGGTATTCGACGATGTCCAGAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGTTGGTGGCAGTTCTGGTGGGCGCAACCATTTGGCTGGTGAAGATCGTGCTGGTGAAGATGCTGGCTTCTTCGTTCCACGTGACGACGTACTTTGACAGAATGAAGGAGAGTGTTTTCCACCACTACATTTTGGATACTTTGTCGGGTCCGCCGATGGAAGACGCGGAGGAGATATTGCGGCAGCACCACCTGACGGGGTCGAAGTCGATGCCTGCGAGGTTGAAGATGAAGGAGGCGAAGAGATTTGGGTCGAGGAAGATCGACATGGAGAAGCTGAGAGAGCTGAGCATGGAGAGCCCTTCGTCTGCATGGAGTGTGAAGAGACTTGTTAACTATGTCAGATCTTCTGGCTTGTCCACCATTTCCAGAACTGTCGATGATTTTGGCAATGCCGAGTCTGAGATCAATAGTGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAGCCTGATGCCAAGTATATTGAAGAAGATGATCTGATGAGATTTTTGAAAAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACAGGACAGATAAGCAGGTCTTCATTCAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCCCTAGCACAGTCACTGAATGATACGAAAACAGCAGTGCAACAGCTTCACAAAATAGCAAGTGCAATTGTCAGTGTGATAATAATCATTGTGATGCTTTTGGTGATGGAGGTGGCCACTCTCAAGATAATATTGTTCTGCATAACACAAACAGTTCTCATAGGTGTTGCCTTCCAAGGTACCTGCAAGACTGTGTTGGAAGCCATAATATTTGTCTTTGTCATGCACCCTTTTGATATTGGAGACCGATGCGTCATTGATGGAGTTCATATGATCGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAACGAGAAAATTTACTACCCTAATGCAGTTTTGCTCTCTAAGCCAATAAGCAACTTCTATAGGAGTCCAGAAATGGGTGATGCAGTTGATTTCACCATCGATGTTTCAACTTCCATGGAGACCATCCTTGCCCTCAAGAAATCAATACAGATTGATTATGATTTTAGGTACATTGAGAGCAAACCCAAGTATTGGAATCCAAAATACAGTTTGATAGCCAAAGGAATAGAGAATGTGGACAAGCTAAAGTTTGCGCTATGTGTGCAACACACTATCAACCATCAGAACTATGGTGAGAGAAACGTTAGGATGACTGAGCTTCTTTTGGAACTGAAAAGGATCTTTGAGATCCATGGTGTGAAGTATCATCTTCTTCCTCAGGAGATTCAGATCACCCATATGAATATTGAACATGGCAAAGTTCTGTTTCAATCATGA 2079 0.4377 MEKSRPSDQVVLFIDQHNPKPSSMEAENHQEKPRHPIKVKTLNRLNFSKPKSRIQEYNYIPRNKLAAAKEEDDIIQPTYKLTSNEEDDEEDDWKWDKEEMEEDGSEHNTTLHQKKRFRVKWRLVMEWALFLNILASLVCSLTISSITNMHVLGLEIWRWCVMIMVTFSGRLVSVFFLERNFMLRDKVLYFIYGLRKSIRNCLWLGLVLLSYWSLVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEEILRQHHLTGSKSMPARLKMKEAKRFGSRKIDMEKLRELSMESPSSAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEINSEWEARNCAQRIFKNVAKPDAKYIEEDDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMGDAVDFTIDVSTSMETILALKKSIQIDYDFRYIESKPKYWNPKYSLIAKGIENVDKLKFALCVQHTINHQNYGERNVRMTELLLELKRIFEIHGVKYHLLPQEIQITHMNIEHGKVLFQS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01015 692 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 36 682 IPR016688 -
Vimu11g01015 692 SUPERFAMILY Sm-like ribonucleoproteins 508 566 IPR010920 -
Vimu11g01015 692 MobiDBLite consensus disorder prediction 1 36 - -
Vimu11g01015 692 Gene3D - 517 566 IPR023408 -
Vimu11g01015 692 PIRSF Memb_At2g17000 8 690 IPR016688 -
Vimu11g01015 692 Pfam Mechanosensitive ion channel 458 667 IPR006685 GO:0016020|GO:0055085
Vimu11g01015 692 MobiDBLite consensus disorder prediction 22 36 - -
Vimu11g01015 692 FunFam Predicted mechanosensitive ion channel 517 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01015 Vimu-Chr11 10668413 10673797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01015 6 682 Mechanosensitive Ion Channel Family AT5G12080 43.040 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01015 K22048 - gmx:100813521 1172.92