Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01012 ATGGAGAGGTACAAGTTAATTAAAGAAGTTGGTGATGGAACATTTGGGAGCGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTGTTGCAATAAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACTTGAGAGAAGTCAAGTCATTGCGAAAAATGAACCATCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAATGTGACACTCTGTGCCTTGTTTTTGAGTATATGGAATACAACCTGTACCAGCAAATGAAAAACAGGGAAAAACTGTTTTCTGAAAATGATGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCAGCGTGGATATTTTCACCGTGATCTGAAGCCAGAGAACTTGTTGGTCACTAAGGATGTCATTAAGATTGCTGATTTTGGCCTAGCCCGAGAGATCAGTTCACAACCACCCTATACTGAGTATGTCTCCACACGGTGGTATCGTGCACCTGAAGTCCTACTTCAGTCCCATTTATATGGATCTAAAGTCGACATGTGGGCAATGGGTGCTATTATGGCTGAGTTGTTCACTCTACGTCCTCTATTCCCCGGTACTAGTGAAGCAGATGAGATCTACAAAATATGCAGTGTAATAGGTAGTCCCACAACTGAATCTTGGGCAGATGGACTTAAGCTTGCCAGGGATATCAACTATCAGTTTCCACAGCTTGCTAGTGTACATCTCTCTGCTCTTATCCCATCCAGAAGTGATGGTGCAATTAGCCTTGTTAGCTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCATCAGAGGCTCTTCAACATCCTTTCTTTCAGAGTTGCTTTTACATCCCTCCATCCCTTCGCACAAGAGCTGTGGCCAGAACTCCTCCATCTGCTGGGACCAGGGGTTCACTGGACCGGCAGGGACTCAAGAGATACTCTAGTGCTTTGCCTAATACAAAATTCACAAACAATTTTTCTTCCCCAAAATTACATGCTTCTATAGCTTCAGGTGTGCAACGGAAGCTCGATTTGGCAACCGAGGATGGAATTAAGAACAAGAAGTCATTGAAGACTACTCAACAATCAAAATATCGATTTCCAGGAAAAGACAGCCCGACTTCTATGAACAAGGGAAGGACTGCACGCGGGGTTTCAGAAAGCGCTGAAAAGTTGGCCAATATGTCCATCGGTACGCGAAGACAGTCCATGGGACAAAGCCGTCCATCGCCTGCTATGAAGGCGGGAGTCAATTGTATATCTGAATCTGGAAACTTCGTACTCAGATCCGGCCAACAAAATCCAACAACTGGGAGAAGTTTGACTAGAAAAGTTGCTGGCTGA 1362 0.4354 MERYKLIKEVGDGTFGSVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRECDTLCLVFEYMEYNLYQQMKNREKLFSENDVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDVIKIADFGLAREISSQPPYTEYVSTRWYRAPEVLLQSHLYGSKVDMWAMGAIMAELFTLRPLFPGTSEADEIYKICSVIGSPTTESWADGLKLARDINYQFPQLASVHLSALIPSRSDGAISLVSSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRTRAVARTPPSAGTRGSLDRQGLKRYSSALPNTKFTNNFSSPKLHASIASGVQRKLDLATEDGIKNKKSLKTTQQSKYRFPGKDSPTSMNKGRTARGVSESAEKLANMSIGTRRQSMGQSRPSPAMKAGVNCISESGNFVLRSGQQNPTTGRSLTRKVAG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01012 453 FunFam cyclin-dependent kinase F-4-like 1 83 - -
Vimu11g01012 453 MobiDBLite consensus disorder prediction 432 447 - -
Vimu11g01012 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vimu11g01012 453 MobiDBLite consensus disorder prediction 362 395 - -
Vimu11g01012 453 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vimu11g01012 453 MobiDBLite consensus disorder prediction 432 453 - -
Vimu11g01012 453 FunFam serine/threonine-protein kinase MAK isoform X1 84 293 - -
Vimu11g01012 453 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01012 453 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 344 - -
Vimu11g01012 453 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01012 453 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01012 453 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Vimu11g01012 453 MobiDBLite consensus disorder prediction 362 388 - -
Vimu11g01012 453 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Vimu11g01012 453 CDD STKc_MAK_like 4 283 - -
Vimu11g01012 453 MobiDBLite consensus disorder prediction 404 423 - -
Vimu11g01012 453 Gene3D Transferase(Phosphotransferase) domain 1 84 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01012 Vimu-Chr11 10653445 10657742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01012 1 290 Core Cell Cycle Gene Families AT3G48750 36.364 6.46e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vimu11g01012 Pkinase 2.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01012 K08829 - gmx:100784474 843.188