Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01011 ATGTTTACGTGTATAGCGTGTACGAAGCAAACGACGGATGAGAGGGAGGAAGAAGGAGTCCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCTGTCAAAAGCCTGACCACACAGATAAAGGATATGGCACTGAAGTTTTCAGGTGCTTACAAACAATGCAAACCCTGCACAGGGTCTAGTAGCTACAAGAAAGGACATAGACCATATCCAGACTTCGATACCATCTCAGAAGGGGTTCCATACCCTTACATTGGGGGTGCAAGCTCAAGTTCAACCCCCGCTTGGGACTTCACAACATCTCACTACCCTGGAGGTAGATCAGACCCACGATTTGCTGGGGCATTTGGTGGTGACCGCACGCCTAGAGGACGAGACTCAGCATCAGTTTGTGATGTAGTCTTAGAGGACGAGGATGAGCCTAAGGAGTGGATGGCAGTGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGGGGAAATGATCTTAAAAGAATTCGCTTCAGCCGAGAGATGTTTAATAAATGGCAAGCGCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTATAACGTCCAGAGATTTAATCGACAGGCGCTCAACACTCCTCCAAGGTCTGAGGACGAGCCAAGAGATTCTAGCTTCTCAAGATTGACATCTGCACAGGAAAGTCCCATGCCGTCAAACAAGGATTGGACCCCCAGGAGTCACTATAAACCTTCTGGGAGCAGAGGATATTACCCCTCTGAACCGTTGGATCATGGTGGAGGTGGTGGCCACTTGCATGCAGGGCCATCTATGGAACCAGCAAGGGATACTACTGCTTCTAGAGATGAGCCTTCTATCAGCAATGCCAGCGAAATGGAGGCAGAATGGGTAGAACAAGATGAGCCTGGGGTTTACATTACAATCCGGCAGTTAGCTGATGGGACCAGGGAGCTTCGACGTGTCAGATTCAGCCGGGAAAGATTTGGTGAGGTGAATGCAAAAACATGGTGGGAAGAAAACAGAGAGAGAATACAAGCTCAATACCTTTGA 1053 0.4862 MFTCIACTKQTTDEREEEGVRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSHYPGGRSDPRFAGAFGGDRTPRGRDSASVCDVVLEDEDEPKEWMAVVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSSFSRLTSAQESPMPSNKDWTPRSHYKPSGSRGYYPSEPLDHGGGGGHLHAGPSMEPARDTTASRDEPSISNASEMEAEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01011 350 ProSiteProfiles BRX domain profile. 295 350 IPR013591 -
Vimu11g01011 350 ProSiteProfiles BRX domain profile. 141 196 IPR013591 -
Vimu11g01011 350 MobiDBLite consensus disorder prediction 220 241 - -
Vimu11g01011 350 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 350 IPR044532 -
Vimu11g01011 350 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Vimu11g01011 350 MobiDBLite consensus disorder prediction 10 24 - -
Vimu11g01011 350 MobiDBLite consensus disorder prediction 205 299 - -
Vimu11g01011 350 MobiDBLite consensus disorder prediction 10 31 - -
Vimu11g01011 350 Pfam Transcription factor regulating root and shoot growth via Pin3 294 349 IPR013591 -
Vimu11g01011 350 Pfam Transcription factor regulating root and shoot growth via Pin3 141 195 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01011 Vimu-Chr11 10647004 10651446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01011 1 350 Major Intrinsic Protein MIP AT1G31880 68.524 5.80e-170 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01011 - - ccaj:109789470 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03163 7 26791887 26794381 Vimu11g01011 11 10647004 10651446 PCT