Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00980 ATGGAGACCAGTAGAAAGGGCCAATGGTTAAGTGTGCTAATATGTGTGGTACTATTACTAAAGGCAGAAGGGGTTCCTGTGGGAATCACTTTTGTTGAAACTGCAGTGGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCACTTCCACAAGGGATCTGGAGCAGGGATTAACAACTGGATTGTTCACTTTGAGGGAGGAGGATGGTGCAACAACGTTACTTCTTGCCTTTCTCGTAGGGACACTCGATTAGGCTCATCTAAAAAAATGGATACCCAACTTTCCTTTTCTGGATTTTTTAGTAACAGTAAAAAGTTCAATCCAGATTTCTACGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCAGCAACCAATTTGCACTTCAGAGGAGCAAGGGTTTTTACTGCTGTTGTTGATGATTTACTAGCAAAAGGAATGAAAAATGCTCAAAATGTATGGGACATTGATGGGTTGGCTGCAATTTTAAACTGTGATCGATTCAAATCACTACTACCTAGAACAACTAAAGTGAAATGCCTTGCAGATGCTGGTTATTTTATCAATGTAAAGGATGTCTCTGGGGCACAGCGCATTGAAGAGTTCTACAGTCAAGTTGTTCAAACACATGGCTCAGCTAAGAATTTGCCTACATCCTGCACTTCAAGACTCAGACCAGGGCTGTGCTTTTTCCCACAAAATGTGGTATCACAAATCAGTACGCCAATCTTCTTTGTAAATGCAGCCTATGATTCATGGCAGATCAAAAACATTTTGGCACCAGGTGCTGCCGATCCCCATGGCACCTGGCGTGAATGCAAGCTTGATATAAAAAAATGCTCATCAAATCAACTCAGTGTAATGCAAGTATTCAGGACTGATTTCCTGAGGGCATTTGGTGCTGTGGGGAACTCTCCATCAAAAGGGCATTTCATAGATGGTTGCTATGCTCACTGCCAAACTGGAACACAAGAGACATGGTTGAGAAATGACTCTCCTGTGTTAGGCAGCACAACAATTGCGAAGGCAGTTGGAGACTGGTATTATGATCGAAAGCCATTTAAGCAGATAGATTGTGCCTATCCTTGCAACCCCACTTGCCACAATCGTATTTTTGAATGA 1167 0.4242 METSRKGQWLSVLICVVLLLKAEGVPVGITFVETAVAKGAVCLDGSPPAYHFHKGSGAGINNWIVHFEGGGWCNNVTSCLSRRDTRLGSSKKMDTQLSFSGFFSNSKKFNPDFYDWNRIKVRYCDGSSFTGDVEAVDPATNLHFRGARVFTAVVDDLLAKGMKNAQNVWDIDGLAAILNCDRFKSLLPRTTKVKCLADAGYFINVKDVSGAQRIEEFYSQVVQTHGSAKNLPTSCTSRLRPGLCFFPQNVVSQISTPIFFVNAAYDSWQIKNILAPGAADPHGTWRECKLDIKKCSSNQLSVMQVFRTDFLRAFGAVGNSPSKGHFIDGCYAHCQTGTQETWLRNDSPVLGSTTIAKAVGDWYYDRKPFKQIDCAYPCNPTCHNRIFE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00980 388 Pfam Pectinacetylesterase 21 368 IPR004963 GO:0016787
Vimu11g00980 388 PANTHER NOTUM-RELATED 13 384 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00980 Vimu-Chr11 10187148 10190565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00980 8 387 Carbohydrate Esterase AT4G19420 59.189 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00980 K19882 - gmx:100781246 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00980 11 10187148 10190565 Vimu7g03286 7 27911829 27914901 PCT