Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00971 ATGGTTAAGCATAACAACGTCATCCCAAGTGGACACTTTCGGAAACATTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCAGGAAGACCAGAAGACGATTAGCTCGGCAGAAGAAGGCTGTCAAAATTTTTCCCAGGCCAACTGCTGGACCTCTCAGGCCCGTTGTTCATGGTCAGACTTTGAAATACAACATGAAAGTCAGAGCTGGGAGAGGATTTTCTCTTGAGGAATTGAAGATCCTTGATGGTGGGGTGGTATTAATGTTATCAAATACTGATTGGCTGTTTGAGCTGTCTTTATCCAAAGGTAACAGAGAGGGAGCCCTAGGCATTATTTCTTTTGTCCCTTCTTTTTATGGAGAAGGTCTACACTGTATCCCACTGAACATGCTAATTGCTAGTCAGCAAAGTGCTGGAATTCCCAAAAAACTTGCACCAACTATTGGTATTGCTGTTGATCATCGTCGCAAGAACCGTTCTTTGGAGAGTCTGCAGGCTAATGTGCAGAGACTCAAAACATACAAGGCCAAGTTGGTTGTGTTCCCAAGACGAGCAAGAAAGGTCAAGACTGGTGATTCCAGTGCTGAGGAACTAGCAAATGCTACCCAAGTTCAGGGTCCATTCTTGCCCATTGTAAGGGAGAAGCCTACTGTTGACCTTGTTAAGGTAACAGATGAAATGAAGTCATTCAAAGCTTACTATAAGCTTCGTCTTGAACGCACCAACCAACGTCACCATGGTGCCCGTTTAAAGAAAGCTGCTGAAGCAGAGAAGGAAGACAAAAAATAG 795 0.439 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKILDGGVVLMLSNTDWLFELSLSKGNREGALGIISFVPSFYGEGLHCIPLNMLIASQQSAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKTGDSSAEELANATQVQGPFLPIVREKPTVDLVKVTDEMKSFKAYYKLRLERTNQRHHGARLKKAAEAEKEDKK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00971 264 Gene3D - 224 264 - -
Vimu11g00971 264 PANTHER 60S RIBOSOMAL PROTEIN L13 1 264 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vimu11g00971 264 Pfam Ribosomal protein L13e 138 242 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vimu11g00971 264 Pfam Ribosomal protein L13e 7 81 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vimu11g00971 264 MobiDBLite consensus disorder prediction 245 264 - -
Vimu11g00971 264 FunFam 60S ribosomal protein L13 223 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00971 Vimu-Chr11 10067670 10072258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00971 2 249 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 66.129 1.00e-110 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00971 K02873 - psom:113303268 305.834