Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00966 ATGTCCCAAGTTAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCATACTACACATACTCCCATTAAGCCAACCACACCCTTCCCAGATTTACACTCATTCACTCGGATTCAGCCTCTGCCTCAACCCATCATCGTCATGGTCATGCCATTCAACCCTTCTTCTCTACTCTTTCATTTTCCATCTCCTCATTCTTCTCACGTCCTGCTCTTTTCTTGTGAAATTTTTCAATGTATTCTGCATATTGAAAGCTTAGATTTGTATAATGAATATTTGGATGTGGTCCGCATGCCCATTACCCCCCAAAATATTAATGGACTTGAAGAATCAGCTAATGATGAAGTGGATGTTCCTTTGAATGAAGAAGTTTCTAGCAAACAGACTGATTCTCAAGATGGTAATGATACTCCAAGAGACATATGTAAAAATCCTACACTGAAACTGGTGGGCAAAGTAGTTCATAGGACTAATGAGCAGAGGAATGCTAAAAGAAATATTGATCAGGAAAAGGTTTTCAAGAAGCCAGACAAGGTCCTGCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGAGGGGCGATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGTAAGAATAAGCACTCAGCTCTGCAGTGTTATCAGAAACCTGTGACTCCTGATGGTGCATCTGCGATCCAGACACATTCCGGTGCTTCTAGTGATGATATGATTCTCTCATCTAATGAACTTTCTGTGACTTCAAGACCTATCAGAGAAAGGGAGGAAAATCCTCTTAGTGAATCCGTAGAAACTGTGTTGAGTCTCAATGGCCAAAGAAAATTTGATATGGACTTTTCCACTGTCAAAGATGATGGTGAGGACCCTTCCAGCTCCTCTATGAGATCTAATAAAATGGAGCAGGTTGGTTTGGCACCACACTTTAATGGTTTAATTCCCTTACATTCATTTCATTATCATCCTGTCCCTTCATGGTCTTATCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGTCCAGTAGCACTAGTTACACAGGTTCTCCAACCATGATGGCAGTTTCTGGCTTCTCCATACCAACGGTAATGCAACCTGCAGCACCTTATTCGTACTCAGGTTTCATGTCAAACTTAGCTGGCCAAGAGGAAGAGTCTTCATTGATTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCTGTCAGCAATAGTACTAGTTCTGGTAATAGATCCCCAACCTTGGGAAAACATTCCAGAGATGGAAGCACACCGAAGGAAGCTGCAGTGAAACAGAACCTTTGGGTGCCTAAGACTGTTAGAATTAACGGTCCAGAAGAGGCTGCAAACAGTTCTATATGGACAACTTTGGGAACAAAATCTGAACAGAACAAAATCATTTTAAAAGGAAGTGTCTTTAAATCATTTGAGTCTAAGACAAGTGCTGATGATAATCAAATTCGAAGGACAAACCCTGCTGCTTTCTCACGCTCTGAATCTTTTCAGGAAAGCATGTGA 1596 0.4085 MSQVRDSAIKLFGADIHTTHTPIKPTTPFPDLHSFTRIQPLPQPIIVMVMPFNPSSLLFHFPSPHSSHVLLFSCEIFQCILHIESLDLYNEYLDVVRMPITPQNINGLEESANDEVDVPLNEEVSSKQTDSQDGNDTPRDICKNPTLKLVGKVVHRTNEQRNAKRNIDQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHSALQCYQKPVTPDGASAIQTHSGASSDDMILSSNELSVTSRPIREREENPLSESVETVLSLNGQRKFDMDFSTVKDDGEDPSSSSMRSNKMEQVGLAPHFNGLIPLHSFHYHPVPSWSYQWNPCWNVKEFRSSSTSYTGSPTMMAVSGFSIPTVMQPAAPYSYSGFMSNLAGQEEESSLIGSAFSGISLSSSSVSNSTSSGNRSPTLGKHSRDGSTPKEAAVKQNLWVPKTVRINGPEEAANSSIWTTLGTKSEQNKIILKGSVFKSFESKTSADDNQIRRTNPAAFSRSESFQESM 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00966 531 ProSitePatterns Zinc finger Dof-type signature. 182 218 IPR003851 GO:0003677|GO:0006355
Vimu11g00966 531 ProSiteProfiles Zinc finger Dof-type profile. 180 234 IPR003851 GO:0003677|GO:0006355
Vimu11g00966 531 Pfam Dof domain, zinc finger 177 234 IPR003851 GO:0003677|GO:0006355
Vimu11g00966 531 MobiDBLite consensus disorder prediction 427 445 - -
Vimu11g00966 531 MobiDBLite consensus disorder prediction 504 531 - -
Vimu11g00966 531 MobiDBLite consensus disorder prediction 427 456 - -
Vimu11g00966 531 PANTHER CYCLIC DOF FACTOR 2 1 530 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00966 Vimu-Chr11 10035487 10037892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00966 153 530 C2C2-Dof Transcription Factor Family AT5G39660 35.539 4.27e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu11g00966 zf-Dof 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00966 - - vun:114177215 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00966 11 10035487 10037892 Vimu11g00966 11 10035487 10037892 ECH