Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00965 ATGGAACCGGGAACCCCATTAGAGAGTTCTTCCAATTTTGACTCTTTAATGTTCAATTCATCATCACACAGAAGTACCGTGTCCATTAGAGAGTCCAGGAGTTTTGGTGTTAACAACTCCACCAGGGAAGTGAGTTTTGGCCACTCAGGATCCAAGCCAGCGAGATATGGGTCAACGGGGGCTGATTCCGAGTTTCTCAGCATGTCTCAGAAGGAAATACGTGATGAGGATGCAAGGTTGGTTTATGTTGATGATCCTGAGAAGACAAATGAAAAGCTTGAATTTGCTGGGAATTCGATTCTTACTGGAAAGTACTCCATCCTCACCTTTCTCCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTACTTCCTTGCAATTGCCATTCTTAATCAGCTCCCTCAGTTAGCTGTTTTTGGGAGGGGTGTTTCCATTATGCCATTGGCCATTGTGCTTCTGGTTACTGCTGTGAAGGATGCATTTGAGGACTGGAGGAGGCACAAGTCTGACAAAATTGAGAACAACAGGTTCGGATTGGTTTTGGTTAATGATCAGTTTGTGGAGAAGAAGTGGAAGCATATTAGAGTTGGGGAAGTTATTAAAATCAGAGCAAATGAAACCATTCCTTGTGATGTTGTGCTGCTCTCGACTAGTGACCCCACTGGGGTTGCTTATGTGCAGACTCTTAATCTGGATGGGGAGTCTAATTTGAAGACTAGGTATGCAAAGCAAGAGACTCAATCTAAGGTGCCAGAAAAGGAGAAGTTAAATCTGTTGATTAAGTGTGAGAAACCCAACAGGAATATATATGGATTTCAGGGTAATATAGAAGTTGATGGAAAGAGGTTGTCTCTTGGATCCTCTAACATTGTCCTTAGAGGCTGTGAGCTCAAGAATACTAATTGGGCATTGGGAGTTGCCGTATATTGCGGCCCTGAGACCAAAGCCATGCTCAACAGCTCAGGAGCTCCATCCAAAAGGAGTCTTCTTGAGACTCGCATGAACTCTGAGATCATTATGCTTTCTTTCTTTCTTATAGCTTTGTGTACAGTGACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGGATGAGTTGAATCTCTCACCTTATTATAGGAAGCTGGATTTTTCAAAGGGGGAAGAGGACAACTATAAATATTATGGATGGGGACCGGAAATTGTTTTCACTTTCCTCATGTCAGTCATAGTGTACCAGGTTATGATCCCCATATCCTTGTACATTTCGATGGAGCTTGTCCGTGTTGGTCAGGCATACTTCATGATCGGAGATTCGAGAATGTATGATAAGGCAACAGAGTCAAGATTTCAGTGCAGAGCTTTGAATATTAACGAAGATTTAGGCCAAATTAAATATGTCTTTTCTGATAAAACTGGCACACTGACTGAGAACAAGATGGAGTTTAAATGCGCAAGCATCTTGGGGTTTGATTACAGTTCAACGGCGGCCAGTCTTGAGAATGAGCAAGTTGAATACTCTGTTCAAGCGGATGGGACGGTCTTTAAGCCAAAGATGATGGTGAAAGTTAATCAAGAGCTTTTGCAATTATCAAAGAGTGGATTTACAAGTGAAGAGGGGAAACAGATATATGATTTCTTTCTAGCATTGGCTGCTTGCAATACCATCGTGCCTCTTGTTGTTGACACATCTGACCCTATGGTCAAGCTGATAGATTACCAAGGGGAATCACCGGATGAGCAGGCATTGACTTATGCAGCCGCTGCGTATGGTTTTATGCTAATTGAACGAACCTCAGGTCACATAGTCCTTGATATTCGAGGAGAAAGGAAAAAGTTCAATGTCTTAGGTTTGCATGAATTTGATAGTGATCGAAAAAGGATGTCAGTTATACTGGGGTACAGTGACAATTGTGTGAAACTTTTTGTTAAAGGCGCAGATACATCCATGCTTAGATTGATTGACAAATCATTGAACACAGACATACTACAAGCAACTGAAACCCATCTTCGTTCTTATTCCTCTGTGGGTTTGAGGACACTTGTTATTGGGATTCGGGACCTAGAAGTTTCAGAATTTGAGCAATGGCACACTGCCTTTGAGGTAGCAAGTACTGCTTTGATGGGTAGGGCAGCTTTGCTTCGCAAGGTCGCTATCAATATAGAGAAGAATCTTTGCATATTGGGTGCAACTGCCATTGAAGACAAACTGCAGCAAGGTGTGCCAGAATCTATTGAGTCTCTAAGGACTGCAGGTATTAAAGTATGGGTCTTGACTGGGGACAAACAGGAAACTGCCATATCTATTGGGTATTCCTCTAAGCTCCTAACGAACAACATGATTCAAATTATAATTAATAGCAACAATAGAGAGTCATGTAGAAGACGTTTACAAGATGCCCTTGTCATGTCTAGACAACACATGACTGTGCCTGGGGTTACTCACAATTCAGGAGGAAGTTCAGGATCTGTTTTAACTCTAGCCTTGATTATTGATGGTACCAGTCTTGTTTATATTCTCGACAGTGAGCTTGAAGAAGATTTCTTTCAACTTGCAATTAGATGTTCTGTTGTTCTCTGTTGTCGAGTGGCTCCACTACAGAAAGCTGGGATTGTTGCCCTTGTGAAGAAGAGGACAGATGACATGACGCTAGCCATTGGAGATGGTGCTAACGATGTATCGATGATCCAAATGGCTGATATTGGAGTTGGAATCAGTGGACAGGAAGGTCGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTATGTGCTCTTTACTGCCTTCACATTGACAACAGCTATAAATGAATGGAGCAGCATGCTATACTCAATAATCTACACTGCATTGCCAACTATTGTTGTTGGTATTCTCGACAAGGATCTTAGTAAAAGGACTCTCTTAAAGAATCCTCAGCTTTATGGGGCCGGGCTGAGAAATGAGGCCTACAACAAAAAGCTGTTTTGGTTGACAATGGCCGATACTTTGTGGCAAAGCATTGCTGTCTTCTTTGCTCCCCTTATTGCATATTGGGGAACCACTGTAGACGTAGCAAGCATAGGTGATCTTTGGACTCTTGCAGTAGTTATTTTGGTTAATTTGCATCTGGCCATGGATGTCATCAGGTGGAATTGGATTACTCATGCAGCCATTTGGGGTTCTATTGTAGCAACTTTCATATGTGTCATGGTTATTGATGCTATACCATCCTTTCCTGGTTACTGGGCTATCTTTGATGTTGGAGGCACTGCATTGTTCTGGTTATGTTTGGTTGGAAGTGTAATAGCCGCATTACTTCCCAGATTAGTCGTAAAATATATTTACCAGTATTATTTTCCCAGTGATATTCAGATTTCAAGAGAAACTGAGAAGTTTGGGAATCCAAGAGACAATGGAGGAAGACAGATAGAAATGCTTCCTGTTTCAGATGGTCCAGTAAGATAG 3444 0.4193 MEPGTPLESSSNFDSLMFNSSSHRSTVSIRESRSFGVNNSTREVSFGHSGSKPARYGSTGADSEFLSMSQKEIRDEDARLVYVDDPEKTNEKLEFAGNSILTGKYSILTFLPRNLFEQFHRVAYIYFLAIAILNQLPQLAVFGRGVSIMPLAIVLLVTAVKDAFEDWRRHKSDKIENNRFGLVLVNDQFVEKKWKHIRVGEVIKIRANETIPCDVVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKVPEKEKLNLLIKCEKPNRNIYGFQGNIEVDGKRLSLGSSNIVLRGCELKNTNWALGVAVYCGPETKAMLNSSGAPSKRSLLETRMNSEIIMLSFFLIALCTVTSVCAAVWLKRHKDELNLSPYYRKLDFSKGEEDNYKYYGWGPEIVFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIGDSRMYDKATESRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFKCASILGFDYSSTAASLENEQVEYSVQADGTVFKPKMMVKVNQELLQLSKSGFTSEEGKQIYDFFLALAACNTIVPLVVDTSDPMVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIVLDIRGERKKFNVLGLHEFDSDRKRMSVILGYSDNCVKLFVKGADTSMLRLIDKSLNTDILQATETHLRSYSSVGLRTLVIGIRDLEVSEFEQWHTAFEVASTALMGRAALLRKVAINIEKNLCILGATAIEDKLQQGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNNMIQIIINSNNRESCRRRLQDALVMSRQHMTVPGVTHNSGGSSGSVLTLALIIDGTSLVYILDSELEEDFFQLAIRCSVVLCCRVAPLQKAGIVALVKKRTDDMTLAIGDGANDVSMIQMADIGVGISGQEGRQAVMASDFAMGQFRYVLFTAFTLTTAINEWSSMLYSIIYTALPTIVVGILDKDLSKRTLLKNPQLYGAGLRNEAYNKKLFWLTMADTLWQSIAVFFAPLIAYWGTTVDVASIGDLWTLAVVILVNLHLAMDVIRWNWITHAAIWGSIVATFICVMVIDAIPSFPGYWAIFDVGGTALFWLCLVGSVIAALLPRLVVKYIYQYYFPSDIQISRETEKFGNPRDNGGRQIEMLPVSDGPVR 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00965 1147 Gene3D - 721 921 IPR023214 -
Vimu11g00965 1147 SFLD Haloacid Dehalogenase 449 925 - -
Vimu11g00965 1147 SUPERFAMILY HAD-like 452 920 IPR036412 -
Vimu11g00965 1147 NCBIfam HAD-IC family P-type ATPase 852 934 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00965 1147 NCBIfam HAD-IC family P-type ATPase 397 486 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g00965 1147 CDD P-type_ATPase_APLT_Dnf-like 97 1006 - -
Vimu11g00965 1147 FunFam Phospholipid-transporting ATPase 721 923 - -
Vimu11g00965 1147 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 1113 IPR023298 -
Vimu11g00965 1147 ProSitePatterns E1-E2 ATPases phosphorylation site. 467 473 IPR018303 -
Vimu11g00965 1147 SUPERFAMILY Calcium ATPase, transduction domain A 179 319 IPR008250 -
Vimu11g00965 1147 Gene3D - 157 322 - -
Vimu11g00965 1147 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 923 1124 - -
Vimu11g00965 1147 PRINTS P-type cation-transporting ATPase superfamily signature 883 902 - -
Vimu11g00965 1147 PRINTS P-type cation-transporting ATPase superfamily signature 465 479 - -
Vimu11g00965 1147 Pfam Phospholipid-translocating ATPase N-terminal 81 146 IPR032631 -
Vimu11g00965 1147 MobiDBLite consensus disorder prediction 1124 1147 - -
Vimu11g00965 1147 FunFam Phospholipid-transporting ATPase 153 322 - -
Vimu11g00965 1147 FunFam Phospholipid-transporting ATPase 569 702 - -
Vimu11g00965 1147 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 471 737 IPR023299 GO:0000166
Vimu11g00965 1147 SFLD p-type atpase 449 925 IPR044492 -
Vimu11g00965 1147 Pfam Cation transport ATPase (P-type) 573 648 - -
Vimu11g00965 1147 Pfam Phospholipid-translocating P-type ATPase C-terminal 916 1114 IPR032630 -
Vimu11g00965 1147 Gene3D - 564 703 IPR023299 GO:0000166
Vimu11g00965 1147 NCBIfam phospholipid-translocating P-type ATPase 95 924 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00965 Vimu-Chr11 10022843 10028658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00965 1 1147 Primary Pumps ATPases AT5G04930 65.401 0.0 1602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00965 K14802 - gmx:100784988 1969.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00965 11 10022843 10028658 Vimu11g00965 11 10022843 10028658 ECH