Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00963 ATGGATGGGGTCGCACGTGCGGACAAGGCTCCGTCCACGGACTTGGCCTCGGAGTGGCGTCCCCGCGGTTCTGCGTTCGTCCCTTGTGTGCCAAAGGCTGGAGAAGAAGCTTCTGCTGCTGCTGCTGAGAAGCCGCAACCGTCTCGCGTGGTTGTGAGGAAGCCCAAGAAATTTGGATATGGATATGTTGTTAAGGACCTTCTAGTGCGGCTCAGTTCACATTTGATGAGTTTTTATGGATTTAGTCGTGGATCTTGTCCCGAACATGATATATATATTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCCGTGAAGATCATTAAAAACCAACCTGCATACTATCAACAAGCACTGGTTGAAGTAACTATCTTATCAACGTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTACATCAACGACATTTGTGCATTTGCTTTGAATTGTTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCCCTTGGTATTGTTCAGCTATTCTCTAAGCAGATTTTATGCGGACTTGCTCTGCTAAAAGAGGCTGGAGTTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATAAAAATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCTTACATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCAGAATTGTTTCTTGGATTACCATTATTCCCTGGAGCTTCAGAATTTGATCTTTTGAAACGGATGATTGAAATACTTGGGTATGCCACTTTCTCTCAAGGGAACATTTTAATTAAATAG 975 0.4154 MDGVARADKAPSTDLASEWRPRGSAFVPCVPKAGEEASAAAAEKPQPSRVVVRKPKKFGYGYVVKDLLVRLSSHLMSFYGFSRGSCPEHDIYIVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILSTLNKKYDPEDKHHIVRIYDYFVHQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKEAGVIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGYATFSQGNILIK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00963 324 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Vimu11g00963 324 Gene3D Transferase(Phosphotransferase) domain 1 172 320 - -
Vimu11g00963 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vimu11g00963 324 Pfam Protein kinase domain 93 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00963 324 SMART serkin_6 92 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00963 324 SUPERFAMILY Protein kinase-like (PK-like) 92 316 IPR011009 -
Vimu11g00963 324 PANTHER DUAL SPECIFICITY PROTEIN KINASE 69 313 - -
Vimu11g00963 324 ProSiteProfiles Protein kinase domain profile. 92 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00963 324 Gene3D Phosphorylase Kinase; domain 1 76 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00963 Vimu-Chr11 9995514 10002201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00963 90 323 Core Cell Cycle Gene Families AT1G66750 35.537 1.71e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vimu11g00963 Pkinase 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00963 K18670 - gmx:100792777 487.648