Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00956 ATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGAGAGAGGCGAAATCAAGAACGTGAGCATTGGCGTGACGGTCGTCATGCAGAACATTCTGCTCAGCCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGACCCTAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGAGAAGGCGGCAAAGGAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAAGATGAGATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGTCTGTTGCCCTACCATCACAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTGATATTGTCTGGTCCTTCAGGTCCACCATTAACATCGGTGCCTAATCAGAATTCTGAGCTGTACCATGCAGCAGGAACCAAGTTTCCATCACATGAACCTCCAAAAAGCTTTGATGTTGCACGGTCTTGGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTACTGGATGGAGGATGTGCTTTTGAACAAGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTAGGCTCAAAGGAACATACCTACTACGTTTGGAGACTGTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGCGGAAGATGGATTCCTCCCTCATTACCAACGTCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAAGCTATGGGGTTTTCTTTGGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCGTCAGCATATCGCACCAAGTTTGAAGCAACATTACCAGACATAATGGAGAGTTTTAATGACTTGTACCGTAGCATAATGGGCCGTATTACTGCTGAAGCCCTAAAGGAACGTGTGCTTAAAGTTTTGCAAGTATGGGCAGATTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAACTCTGGTGTAATTCCATTCCATTCCATATGTGGGGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTTCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGCTTGTTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTAGATGATGAACTGAAATATGCCCACAACCAAGTGAGTTCTGGGAAGTATTCAAGTAATCGGCAAGAAACAAGTGCAGAGCCTGAACCAGTAGGACTTTCTTCATGGAACCACTATGGGGATGAAGATTTGCCATCACAGAGCAGAAGTTCTGTATCTTTAGCTTCTACACTTCCTATTCAACAACCTGAACTTAAGGCATTCACAAAAAAGGAAAAGAGTGATCCAGTTTTGCCAGCCTCAAAATGGGCTCGGGAGGATGATGAGAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAGTCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCATACTGACAGTGGAATGAATGAAGAGCAGAGGTTGTAA 2265 0.4371 MATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHAEHSAQPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELYHAAGTKFPSHEPPKSFDVARSWVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRQETSAEPEPVGLSSWNHYGDEDLPSQSRSSVSLASTLPIQQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHTDSGMNEEQRL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00956 754 Gene3D Surp module 250 319 IPR035967 GO:0003723|GO:0006396
Vimu11g00956 754 SUPERFAMILY RNA-binding domain, RBD 85 181 IPR035979 GO:0003676
Vimu11g00956 754 CDD RRM_SR140 91 174 IPR035009 -
Vimu11g00956 754 MobiDBLite consensus disorder prediction 675 707 - -
Vimu11g00956 754 MobiDBLite consensus disorder prediction 1 93 - -
Vimu11g00956 754 MobiDBLite consensus disorder prediction 339 372 - -
Vimu11g00956 754 SMART rrm1_1 93 169 IPR000504 GO:0003723
Vimu11g00956 754 ProSiteProfiles SURP motif repeat profile. 264 307 IPR000061 GO:0003723|GO:0006396
Vimu11g00956 754 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 166 IPR000504 GO:0003723
Vimu11g00956 754 MobiDBLite consensus disorder prediction 649 672 - -
Vimu11g00956 754 SUPERFAMILY ENTH/VHS domain 376 513 IPR008942 -
Vimu11g00956 754 Gene3D - 372 518 IPR008942 -
Vimu11g00956 754 SMART 558neu5 379 514 IPR006569 -
Vimu11g00956 754 Pfam CID domain 379 507 IPR006569 -
Vimu11g00956 754 PANTHER RNA PROCESSING PROTEIN LD23810P 9 740 - -
Vimu11g00956 754 MobiDBLite consensus disorder prediction 346 372 - -
Vimu11g00956 754 ProSiteProfiles SAP motif profile. 566 600 IPR003034 -
Vimu11g00956 754 Gene3D - 2 175 IPR012677 -
Vimu11g00956 754 SMART surpneu2 262 316 IPR000061 GO:0003723|GO:0006396
Vimu11g00956 754 SUPERFAMILY Surp module (SWAP domain) 243 319 IPR035967 GO:0003723|GO:0006396
Vimu11g00956 754 ProSiteProfiles CID domain profile. 372 517 IPR006569 -
Vimu11g00956 754 Coils Coil 377 397 - -
Vimu11g00956 754 MobiDBLite consensus disorder prediction 620 640 - -
Vimu11g00956 754 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 173 IPR000504 GO:0003723
Vimu11g00956 754 MobiDBLite consensus disorder prediction 1 75 - -
Vimu11g00956 754 Pfam Surp module 262 314 IPR000061 GO:0003723|GO:0006396
Vimu11g00956 754 MobiDBLite consensus disorder prediction 620 754 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00956 89 169 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.38e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00956 K12842 - gmx:100776093 1322.76