Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00952 ATGGAGAAACTCAAAGTGTCGACAAAGCATGATTCTGATGGCAGCAGTGAACAGAAAGATTCATTTCCAATATTCGAATTGCGCGAGAGTCAAAATGTTGGACAGCAGAGGTTCAGAACAGAGGAAGATGATACAAAAGCTGTGAGATTCAATGGAGCTTCTGCAATTGCTTCCTCTAATTCTGCAAGCGGTAAGGAATCTGCCAACAAGTGGATGGCATTTGCTAGGGACCCTGGTTCTGCAGTTGATAGCAACTCAGCAGTAAATGATAAAAGTACAACTCAAGACAATTACTTGAGGAATCATCTGAGTGACAAGTCTTCTTCTGATCAACAAGTTGTAACTGAAGCAACCATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGGTGAACCCTGAGAACTTCAAAACCAGTTCTTCTTTCGATGCTGACAGAACCAGAAACTTGTCAGATAGATTTGCTGAATCAACAAGGACATCTGGGGACTCAAATTTTGGATCTGAGTCATCATCAGGAGTTTTAAGGGTGTCACAAGAGTTGAAGGATGCATTGGCGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGACTGCCCAATTGTGTATGCCAGTAGTGGTTTTTTCACTATGACTGGCTATTCTTCAAAGGAGATTATTGGAAGGAATTGTCGGTTTCTTCAGGGGCCTGATACAGACAAGAATGAAGTGGCGAAAATTCGGGATGCTGTTAGAAATGGAAGAAGTTATTGTGGCAGATTATTAAACTACAAGAAAAATGGAACTCCATTCTGGAATCTTCTCACTGTCACCCCAATCAAAGATAACGAAGGCAATACTATCAAATTCATCGGGTCAGTTCTGCCTTTCCTATCTGGTTTTTCCTGGTTTTCATGA 903 0.4186 MEKLKVSTKHDSDGSSEQKDSFPIFELRESQNVGQQRFRTEEDDTKAVRFNGASAIASSNSASGKESANKWMAFARDPGSAVDSNSAVNDKSTTQDNYLRNHLSDKSSSDQQVVTEATIAERTAEWGLVVNPENFKTSSSFDADRTRNLSDRFAESTRTSGDSNFGSESSSGVLRVSQELKDALATLQQTFVVSDATKPDCPIVYASSGFFTMTGYSSKEIIGRNCRFLQGPDTDKNEVAKIRDAVRNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDNEGNTIKFIGSVLPFLSGFSWFS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00952 300 Gene3D PAS domain 190 290 - -
Vimu11g00952 300 MobiDBLite consensus disorder prediction 1 17 - -
Vimu11g00952 300 ProSiteProfiles PAS repeat profile. 176 249 IPR000014 -
Vimu11g00952 300 MobiDBLite consensus disorder prediction 1 45 - -
Vimu11g00952 300 PANTHER PROTEIN TWIN LOV 1 43 287 - -
Vimu11g00952 300 CDD PAS 203 289 IPR000014 -
Vimu11g00952 300 SUPERFAMILY PYP-like sensor domain (PAS domain) 197 288 IPR035965 -
Vimu11g00952 300 Pfam PAS domain 197 288 IPR000014 -
Vimu11g00952 300 NCBIfam PAS domain S-box protein 202 289 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00952 Vimu-Chr11 9889704 9890789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00952 174 290 AGC Kinase Gene Family AT5G58140 47.009 5.33e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00952 K20715 - gmx:100804783 431.795