Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00940 ATGACAATATTTGGGATGAATGGACGTTTTTCGTACAACATATATCTGTTTGGAGAAAATGACATCAATGTTTTGATGCCGACAACTCTTTTCAGATTCACCAGTAGAGTTTTTTACAGAAATACTCCACTTCCAGAACGCTTTTCTGGTCATATAAAAAGTCAAACCTTCTTCCAAAAGGGTTCACATTTTTTGACGACACTGTTATCGCCATTGCTCAGATATTTCTGCACTCAAATTATTGAAGCAATGGCAAACGTGGGTGCTGACGAAATTCGAAAAATCTTCCAAATTGATGATGTTGCTCCTCACTCTCAATTCCAAATAGTTACTCTATGGATTGTGATTAATGTTACTGATAACATCATGCATGCAGCAACACAAGGTCCCTTAAGAATGGTTCTAATGTCAGAAGAAGCTTTTAACACGTTGAAGAAATCTACTGTGTTACAAACTGAGTGTTGTTGCATATGTTTGGATGAATTCAATCTCAACGCTGAGCGTTACATTCTTCCATGTCAACACTTCTTTCATAAAAAATGTATCATGCGTTGGATACACACCAATCAGACCTGTCCGATACACACTAATCAGACCTGCCCCATGTGTCGGCAATCTTTCCGAACCTTAAAAGATTAG 639 0.3772 MTIFGMNGRFSYNIYLFGENDINVLMPTTLFRFTSRVFYRNTPLPERFSGHIKSQTFFQKGSHFLTTLLSPLLRYFCTQIIEAMANVGADEIRKIFQIDDVAPHSQFQIVTLWIVINVTDNIMHAATQGPLRMVLMSEEAFNTLKKSTVLQTECCCICLDEFNLNAERYILPCQHFFHKKCIMRWIHTNQTCPIHTNQTCPMCRQSFRTLKD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00940 212 Pfam RING-like zinc finger 155 182 IPR001841 -
Vimu11g00940 212 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 137 204 - -
Vimu11g00940 212 SUPERFAMILY RING/U-box 144 209 - -
Vimu11g00940 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 211 IPR013083 -
Vimu11g00940 212 ProSiteProfiles Zinc finger RING-type profile. 155 204 IPR001841 -
Vimu11g00940 212 SMART ring_2 155 203 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00940 Vimu-Chr11 9738709 9739347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00940 127 194 C3H Transcription Factor Family AT1G68070 34.783 7.08e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00940 - - vum:124843592 253.832