Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00933 ATGGGTAGTAGTGACATGGACAAAACCCCGAAGGAGAAGGAGTCCAAGACACCTCCAGCTACGTCACAGGAGCAGTCTCCAACAACTGGCATGGCCACTGTTAATCCTGACTGGTCTAACTTTCAGACATATTCTCCCATACCTCCACACAGTTTCTTGGCATCAAGTCCCCAAGCCCACCCATTTATGTGGGGTGTCCAGCATGTTATGCCTCCCTATGGCACCCCACCGCATCCCTATGTAGCAATGTATCCCCATGGTAGCATTTATGCCCATCCATCCATTCCTCCGGGCTCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCAGATTCTTCGGGAAATAACCCAGGCAGCATTGAAGTTGGTGCTAAACCTCCTGAGGTGAAGGAAAAATTACCAGTCAAAAGATCAAAAGGAAGTGCTAGTGGGGGTAGTTTGAATATGTGGATTACTGGAAAAAATAGTGAACTTGGTAAAACAAACGGAGAATCTGCTAATGGGATTCATTCCAAGAGATTTAATACTGGGGCTTTATCTGTCTTGTCTACTGCAGAAAATATATGGGTAGGTGGTGATAGTGCAAGTGACGGAACTAGTGAAGGAAGTGGTGAGAATTCCCAGAATGATTCTCAGTTGAAATCCGGGGAGAGGCAGGACTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCGGCTCCTCAAAACGGGGTACATAGTAGACCTCAGACACTTGTTAACCAAACTATGCCTGCCATACCTATATCTACTGCAAGTGCTCCCGGAGCAATTCCTGGTCCCACAACTAATTTAAATATAGGAATGGATTACTGGGGCACGCCAACTTCATCCGCCATTCCTGCACTGCATGGAAAGGTTTCTTCTACTGCAGTTGCTGGGGGGATGATTACTGCTGGGTCAAGAGATGGTGTTCAGTCACAAATTTGGCTACAGGACGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATAGAGAATCCGCACGTAGATCCAGGTTACGGAAGCAGGCTGAATGCGATGAACTAGCTCAGCGTGCTGACGTTTTGAAAGAAGAAAATGCCACTCTCCAAGCAGAAGTAAGCAGGATCAGGAGTGAGTACGAGCAGCTACTTTCTGAGAATGCTTCCCTCAAGGAGAGACTTGGGGAGATACCTGGTGTTGCTACGCCTGGGAACGAGGATGTTAGGTCTGGCCAGAATGATCAGCATGTTACTAATGACACTCAACAAAGTCGTCAGAAGGAGGCTGTGCAGGGTGTTCATTAG 1302 0.4677 MGSSDMDKTPKEKESKTPPATSQEQSPTTGMATVNPDWSNFQTYSPIPPHSFLASSPQAHPFMWGVQHVMPPYGTPPHPYVAMYPHGSIYAHPSIPPGSYPFSPFAMASPNGIADSSGNNPGSIEVGAKPPEVKEKLPVKRSKGSASGGSLNMWITGKNSELGKTNGESANGIHSKRFNTGALSVLSTAENIWVGGDSASDGTSEGSGENSQNDSQLKSGERQDSFEDEPSQNGSSAPQNGVHSRPQTLVNQTMPAIPISTASAPGAIPGPTTNLNIGMDYWGTPTSSAIPALHGKVSSTAVAGGMITAGSRDGVQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLQAEVSRIRSEYEQLLSENASLKERLGEIPGVATPGNEDVRSGQNDQHVTNDTQQSRQKEAVQGVH 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00933 433 Coils Coil 344 392 - -
Vimu11g00933 433 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 425 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vimu11g00933 433 MobiDBLite consensus disorder prediction 1 42 - -
Vimu11g00933 433 SMART brlzneu 324 388 IPR004827 GO:0003700|GO:0006355
Vimu11g00933 433 MobiDBLite consensus disorder prediction 390 433 - -
Vimu11g00933 433 MobiDBLite consensus disorder prediction 229 245 - -
Vimu11g00933 433 Gene3D - 327 381 - -
Vimu11g00933 433 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 326 389 IPR004827 GO:0003700|GO:0006355
Vimu11g00933 433 MobiDBLite consensus disorder prediction 196 219 - -
Vimu11g00933 433 SUPERFAMILY Leucine zipper domain 327 383 IPR046347 GO:0003700|GO:0006355
Vimu11g00933 433 Pfam Disordered region downstream of MFMR 135 291 - -
Vimu11g00933 433 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vimu11g00933 433 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 331 346 IPR004827 GO:0003700|GO:0006355
Vimu11g00933 433 MobiDBLite consensus disorder prediction 196 245 - -
Vimu11g00933 433 MobiDBLite consensus disorder prediction 1 18 - -
Vimu11g00933 433 CDD bZIP_plant_GBF1 329 379 IPR045314 GO:0003700|GO:0006355
Vimu11g00933 433 MobiDBLite consensus disorder prediction 326 347 - -
Vimu11g00933 433 MobiDBLite consensus disorder prediction 19 42 - -
Vimu11g00933 433 MobiDBLite consensus disorder prediction 405 433 - -
Vimu11g00933 433 Pfam bZIP transcription factor 324 386 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00933 Vimu-Chr11 9686115 9692632 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00933 1 397 bZIP Transcription Factor Family AT2G35530 58.477 1.63e-148 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu11g00933 MFMR_assoc 6.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00933 K09060 - gmx:100101912 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03450 7 29156833 29157348 Vimu11g00933 11 9686115 9692632 PCT