Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00931 ATGACAACCCTTCGTCTGCTGCTTTTTCTGGGATTCTTGTGGGCTGAAATTCATGTCATTTCTTCATACACTGACTCTCAAGACGTTGTTGCACTTAGATCATTAAAAGATGTATGGCAAAATACACCGCCCAGCTGGGACAAATCAGATGACCCATGTGGAGCACCATGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTAGGACTGTCAACAATGGGCCTGAAGGGGAAATTAAGTGGAGATATTGGTCAACTTAAAGAACTGAGATCCTTGGATTTGTCTTTTAATAGAGATTTAACAGGTCCTCTCTCTCCAGAGTTAGGAGAACTAAGCAAGCTAAATATCTTGATTTTGGCTGGTTGCAGCTTCAGTGGCAATATTCCAGATGAATTAGGAAATCTTTCAGAGTTATCTTTCCTGGCTTTAAACTCAAACAACTTCACTGGAAAAATACCTCCTTCCTTGGGTAAACTCTCCAAAATTTATTGGTTGGACTTGGCAGACAATCAGCTGACAGGTCCTATCCCAGTTTCAACCTCCACCTCCCCTGGATTAGACCTTCTTTTAAAGGCTAAACACTTCCATTTCAATAAGAACCAGCTTTCAGGTTCCATTCCCCCCAAGCTTTTCAGCTCTGAGATGATACTCATACACATATTGTTTGATGGGAATAATTTAAGTGGGACTATACCTTCAACATTGGTACAAGTTAAGACTGTTGAGGTTCTGAATTTAGCCCATAACAATTTCACAGGTCCTCTACCTGACTTAGCTGGAATGGATACCCTCAACTATGTAGATCTTAGTAACAACTCTTTTGATGCATCTGATGCTCCAACTTGGTTCATAACTCTGCCATCACTCACCACTCTGGTTATGGAGTTTGGATCCCTTCAAGGTCCTCTTCCATCGAAACTATTTGACATTCCTCAAATACAGCAAGTGAAACTACGAAACAATCAATTGAACGATACATTGAATATGGGTGAAAACATTTGTCCTCAATTGCAGCTTGTAGATTTGCAACAAAATGAGATTTCCATAGTGACTCTCAGTTCACAATACAAAAATACATTGATTCTGATAGGAAATCCAGTGTGCAGTAGTGCTCTCTCAAATACAAATTACTGCCAACTTCAGCAGCAGGCTAAGCAACCTTATTTCACCAGCTTGGCTAATTGTGGAGGCAAATCTTGTCCTCCTGATCAAAAGCTCAGCCCTCAAAGTTGTGAATGTGCCTATCCATATGAAGGAATGCTGTACTTTAGAGCACCCACATTCAGAGAACTGTCCAATGTAAATACTTTCCATTCACTTGAAATGAGCCTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTATCTTTACAAAATCCCTTCTTTGATAGTAATGACTATCTTCAAGTGCAACTAGCACTCTTTCCACCAACAGGGCAATACTTTAATAGGTCAGAAGTTCAAAGAATTGGGTTTGAATTAAGTAATCAAACTTACAAGCCTCCAAAAGAGTTTGGACCCTATTACTTCCTTGCATTTTCTTATCCCTTTTCAGGTTCTCACAAAGGAGCTTCTCTTAGCAAAGGTGTTATTATTGGAATAGCAGTTGGCAGCACATTTCTGGTTCTGAGCCTTATAGGGTTAGCTATTTACGCGATTCTGCAAAAGAAGCGTGCAGAGAGAGCCATAGGATTAAGTAGACCATTTGCATCATGGGCACCAACTGGGAAGGATAGTGGAGGTGCACCACAGTTAAAGGGAGCAAGATGGTTCTCTTATGATGATCTCAAGAAGTGCACCAGCAATTTCTCTGAAAACAATGAGATAGGCTCTGGAGGCTATGGCAAGGTGTACAAAGGTGTTCTTCCTGATGGGAAAATCGTTGCAATCAAACGAGCTCAGCAAGGATCTATGCAAGGAGGCCTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAATCTTGTTGGCCTTGTGGGATTCTGCTTCGAACAAGGGGAACAGATGTTGGTTTACGAATTTATACCCAATGGAACACTTAGGGAGAGTTTGTCAGGTAACTCGCATGATAGCAACATTCAAGGTTATCTGGATCCTGAGTATTACATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGAGTAGTGATGCTTGAACTAATAACTTCAAGACAACCAATCGAGAAGGGGAAGTACATTGTCCGCGAGGTGCGGACGCTGATGAATAAGAAGGATGAAGAACACTATGGTTTGAGGGAAGTGATGGATCCAGTGGTGAGGAACACACCGAACCTCATAGGATTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGAGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACTTCTGCATCCTCATCTGCCACTGATTTTGGTGTTTCCAAGGGTGGAATGAGGCATCCCTACATTGATGCTTCTTTTACCAAGAAAGACAATGGTAATGACAGTAGTAATAGTGCCTTTGACTACAGCGGAGGCTACACACTTTCAACAAAAGTTGAACCCAAATAG 2622 0.4165 MTTLRLLLFLGFLWAEIHVISSYTDSQDVVALRSLKDVWQNTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGQLKELRSLDLSFNRDLTGPLSPELGELSKLNILILAGCSFSGNIPDELGNLSELSFLALNSNNFTGKIPPSLGKLSKIYWLDLADNQLTGPIPVSTSTSPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSEMILIHILFDGNNLSGTIPSTLVQVKTVEVLNLAHNNFTGPLPDLAGMDTLNYVDLSNNSFDASDAPTWFITLPSLTTLVMEFGSLQGPLPSKLFDIPQIQQVKLRNNQLNDTLNMGENICPQLQLVDLQQNEISIVTLSSQYKNTLILIGNPVCSSALSNTNYCQLQQQAKQPYFTSLANCGGKSCPPDQKLSPQSCECAYPYEGMLYFRAPTFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFDSNDYLQVQLALFPPTGQYFNRSEVQRIGFELSNQTYKPPKEFGPYYFLAFSYPFSGSHKGASLSKGVIIGIAVGSTFLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPTGKDSGGAPQLKGARWFSYDDLKKCTSNFSENNEIGSGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFIPNGTLRESLSGNSHDSNIQGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLREVMDPVVRNTPNLIGFGRFLELAMQCVEESAADRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGVSKGGMRHPYIDASFTKKDNGNDSSNSAFDYSGGYTLSTKVEPK 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00931 873 Gene3D Ribonuclease Inhibitor 190 365 IPR032675 -
Vimu11g00931 873 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vimu11g00931 873 MobiDBLite consensus disorder prediction 846 863 - -
Vimu11g00931 873 SUPERFAMILY L domain-like 35 373 - -
Vimu11g00931 873 ProSiteProfiles Protein kinase domain profile. 605 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00931 873 Gene3D Transferase(Phosphotransferase) domain 1 682 831 - -
Vimu11g00931 873 Pfam Protein tyrosine and serine/threonine kinase 608 694 IPR001245 GO:0004672|GO:0006468
Vimu11g00931 873 Pfam Protein tyrosine and serine/threonine kinase 702 805 IPR001245 GO:0004672|GO:0006468
Vimu11g00931 873 ProSitePatterns Protein kinases ATP-binding region signature. 611 633 IPR017441 GO:0005524
Vimu11g00931 873 FunFam Leucine-rich repeat protein kinase family protein 573 680 - -
Vimu11g00931 873 FunFam Leucine-rich repeat family protein 27 183 - -
Vimu11g00931 873 MobiDBLite consensus disorder prediction 842 873 - -
Vimu11g00931 873 Gene3D Ribonuclease Inhibitor 25 189 IPR032675 -
Vimu11g00931 873 PANTHER RECEPTOR-LIKE PROTEIN 55 701 808 - -
Vimu11g00931 873 SUPERFAMILY Protein kinase-like (PK-like) 586 812 IPR011009 -
Vimu11g00931 873 Gene3D Phosphorylase Kinase; domain 1 579 680 - -
Vimu11g00931 873 FunFam Leucine-rich repeat protein kinase family protein 184 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00931 Vimu-Chr11 9668110 9673311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00931 701 873 Receptor kinase-like Gene Family AT1G79620 57.471 8.14e-50 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vimu11g00931 PK_Tyr_Ser-Thr 3.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00931 - - gmx:100792249 1276.15