Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00930 ATGGAAGAAGACCAAGAGTCTCGGCATCAAAGGGGAAATCGAGGGTCTGTTCCTCGGGAAGGAGAAGCGTTAGAGGGTAATGGAGGAGGTGTTAACTGCAATGAGATTCGTTCTTTCACGTGCGATATCTGCAACAAAGGTTTCAGTTCGGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACCTCTCGAGAAAACGTGTTCATGGGGAGAAACAAAGCACTGGTGATGCTGCAAAATCCAAGGCGGCGAAATGGGTGATGGTGGATGGTAACCCCACTTGTTCCGTTTGTGGAAAGACCTTTTCTTCCAGGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGAAGGCGAAGAAGGGAATTCAAAGCAACGCTCCGATCGTTCGTGCCTCCTCCAATTCCACTTCTTCCTCAACCCTTTCTGATGATTTGACCGTTGATCTCTCTCGAGTTCTCAGGAGTTGGTCCGTGACTGCCAAGAGAGGCCGCATAAGCTCTTCTTGCAGCAAATCAGATTCTGGTTTGGAAGAAGGTGATGAGATTGAGCCACGTATGCAAGAGGCTGCGTATGAGCTCATGTTGCTGGCCAGAGGGAGTCCAAAGTGCGAGCAAGAGGTTGTCGCTGATCAGATTCAAGAACATCCATTCAACAAGAGGGGGCGTGAAGAGGAGCTTTCACACCCAATTTTGGGGAATTCTGATGACGTGAAGATCAAGAAGAGAAATAGAAAGAAGGTGAAATTAACAGAGTTAGCATCAACCGGGGAAGGGAACAAATTCGCCCAATGCAGAAAATGCAATACAACTTTCCCAAGTCACCAATCTCTGAATGATCATCTATGCAGCCTTCAAAATTCTAAGAATATTCAGTCTCGGTCACATGGTGTGTCAGCCACAAAAGAAGAGCATCATGCCAAAACAACCATACAAGGGGAGAAAACAGGACCAGAAACTGTTTTAGAGAGTAGAGCTGTGGAAGCCATGAGAGGTTATGAGTGTGAAGTTTTGAACGAGAGTTTCTCAATTGGTCAAGCCTTTGGGGACCACAAGAGATCTGATTGGACCAGCATGGGAGAAGGTCGGTCAGCTCAGGCAACTTCTTCAAACATGGGAAATGGTCAGAATTGTTCAAAGGTTCTGAGTTTTGATCTCAATCAGATTCCTGCTACGGATGGGGAAGAGGGTGTTCGATCAGATTTGTTTATTCCTGCCAACATTATGACATCATCCAGTTATGATTCCTCTTGCTAA 1260 0.4635 MEEDQESRHQRGNRGSVPREGEALEGNGGGVNCNEIRSFTCDICNKGFSSGKALGGHMRIHNLSRKRVHGEKQSTGDAAKSKAAKWVMVDGNPTCSVCGKTFSSRKSLFGHMRSHTEKKAKKGIQSNAPIVRASSNSTSSSTLSDDLTVDLSRVLRSWSVTAKRGRISSSCSKSDSGLEEGDEIEPRMQEAAYELMLLARGSPKCEQEVVADQIQEHPFNKRGREEELSHPILGNSDDVKIKKRNRKKVKLTELASTGEGNKFAQCRKCNTTFPSHQSLNDHLCSLQNSKNIQSRSHGVSATKEEHHAKTTIQGEKTGPETVLESRAVEAMRGYECEVLNESFSIGQAFGDHKRSDWTSMGEGRSAQATSSNMGNGQNCSKVLSFDLNQIPATDGEEGVRSDLFIPANIMTSSSYDSSC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00930 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Vimu11g00930 419 MobiDBLite consensus disorder prediction 128 143 - -
Vimu11g00930 419 FunFam Zinc finger protein 93 116 - -
Vimu11g00930 419 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vimu11g00930 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Vimu11g00930 419 MobiDBLite consensus disorder prediction 1 29 - -
Vimu11g00930 419 FunFam Zinc finger protein 37 62 - -
Vimu11g00930 419 MobiDBLite consensus disorder prediction 356 375 - -
Vimu11g00930 419 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vimu11g00930 419 SUPERFAMILY beta-beta-alpha zinc fingers 94 283 IPR036236 -
Vimu11g00930 419 Pfam C2H2-type zinc finger 39 61 - -
Vimu11g00930 419 Pfam C2H2-type zinc finger 95 116 - -
Vimu11g00930 419 Gene3D Classic Zinc Finger 94 147 - -
Vimu11g00930 419 Gene3D Classic Zinc Finger 31 91 - -
Vimu11g00930 419 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 191 394 IPR044653 GO:0003700
Vimu11g00930 419 MobiDBLite consensus disorder prediction 1 18 - -
Vimu11g00930 419 SMART c2h2final6 264 284 IPR013087 -
Vimu11g00930 419 SMART c2h2final6 39 61 IPR013087 -
Vimu11g00930 419 SMART c2h2final6 93 115 IPR013087 -
Vimu11g00930 419 MobiDBLite consensus disorder prediction 112 143 - -
Vimu11g00930 419 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Vimu11g00930 419 MobiDBLite consensus disorder prediction 360 375 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00930 37 129 C2H2 Transcription Factor Family AT2G26940 35.652 1.96e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g00930 zf-C2H2_6 4.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00930 - - vra:106765955 759.599