Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00926 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGTAATTGTGCTTATTCTCTTGAATCCACAGGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGTCGGTGGTTCTTATGATGAGAGAAGGTTTCTTGATGAAAGATATCCAAGGGATCCAGTTTACCAGAGAAATAATTTCCACCCTGACATTTTGGACAGGGAGGCCTACCTGCCGCCAGGACCACCTCCTGTTGGCCACTGGAGTCAATCAAAACGAAGAGGTTATGATGAAGATTATCCTCTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAATTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGCAGAAGAGACAGTAATTGGAGGCGACGCGAATCACGGGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGGCATGAGCGCTCACGCTCACGATCGCATTCTCGTTCGCGTTCACGTTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGCTCTCAGTCTCGTGGATATGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAGGTGAAAGACGTAGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTTGTGAAAGGTCTTTCGCAGAAGACAACAGATGAAGATCTATACCAAATCCTTGCTGAATGGGGCCCCCTTCGTCACGTTAGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTTTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCGGATGGAGCTGTGAAATCAGGCCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGACATTTCATTATCAAATTCAGCAGCTACCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCTTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAAGCTGCAACATTTGCCCAACAGTATGATTCAGTGGGATGGGCTCCAAAAGAGTATAACCCAGATGACAAACTATCTACTGGGCAAGAACAACCTAGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGTTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTATATACCTTGTACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAACAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAATAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCGTATTCTGCCGGGCATTCTGCTAAGAATAAGTCAAAAAATGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCCGGCACAGCCACGGCCAGTTAGTAATAGTCTTGGAGGCACTGTGATGGGGGTCATAAGGGGCTCAGGAAGGGGGGTTGCTAAATCAGATAGTTATTCAGGTTCTACATCAGTTGCATCATCTATGCACAGTTCATCTTCAGCAAATGTTGATCCACAGACAGTTGTTACTCCCTTTAGAACAGATGTGTCTGCCCTGAGTTCATATACACCGCCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAGCTCACAAGGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAGTAAGACTACTTAA 2889 0.45 MDPGRYALHQGWDNNSVIVLILLNPQALEGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREGSYTESRYDKGERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGFVVDGRKLFFEYSSKPTGGPGPDGAVKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPSTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKNEIMVRETNASNPGIHTTLAQVAAIDSPAQPRPVSNSLGGTVMGVIRGSGRGVAKSDSYSGSTSVASSMHSSSSANVDPQTVVTPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASAHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSSKTT 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00926 962 MobiDBLite consensus disorder prediction 173 238 - -
Vimu11g00926 962 ProSitePatterns Zinc finger RanBP2-type signature. 430 449 IPR001876 -
Vimu11g00926 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 385 IPR000504 GO:0003723
Vimu11g00926 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 483 549 IPR000504 GO:0003723
Vimu11g00926 962 SMART rrm1_1 482 557 IPR000504 GO:0003723
Vimu11g00926 962 SMART rrm1_1 325 400 IPR000504 GO:0003723
Vimu11g00926 962 MobiDBLite consensus disorder prediction 779 801 - -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 938 962 - -
Vimu11g00926 962 Gene3D - 304 410 IPR012677 -
Vimu11g00926 962 SUPERFAMILY RNA-binding domain, RBD 315 408 IPR035979 GO:0003676
Vimu11g00926 962 SUPERFAMILY Ran binding protein zinc finger-like 421 456 IPR036443 -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 857 881 - -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 239 265 - -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 173 321 - -
Vimu11g00926 962 SUPERFAMILY RNA-binding domain, RBD 479 568 IPR035979 GO:0003676
Vimu11g00926 962 Gene3D - 424 456 - -
Vimu11g00926 962 CDD RRM1_RRM2_RBM5_like 479 559 - -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 672 698 - -
Vimu11g00926 962 Pfam OCRE domain 623 671 IPR041591 -
Vimu11g00926 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 481 561 IPR000504 GO:0003723
Vimu11g00926 962 MobiDBLite consensus disorder prediction 779 799 - -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 77 96 - -
Vimu11g00926 962 CDD OCRE_SUA_like 620 672 IPR035623 -
Vimu11g00926 962 ProSiteProfiles Zinc finger RanBP2 type profile. 426 455 IPR001876 -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 851 881 - -
Vimu11g00926 962 Gene3D - 465 584 IPR012677 -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 895 962 - -
Vimu11g00926 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 404 IPR000504 GO:0003723
Vimu11g00926 962 SMART zf_4 428 452 IPR001876 -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 140 159 - -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 599 623 - -
Vimu11g00926 962 PANTHER RNA-BINDING PROTEIN 215 941 - -
Vimu11g00926 962 MobiDBLite consensus disorder prediction 266 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00926 Vimu-Chr11 9593727 9599829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00926 323 545 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.45e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00926 K13094 - gmx:100787998 1560.81