Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00908 ATGGGTCTCGGCTTCTCCCGTGCTCCAACACTTGGTTCATCAGACATTCACGACACCACAACCACCACGATCAGAAAGAGTCAGTTTTCCGTGAGAGAAGGCATAGACAGCGAATGCTCTCCTCTTCCATTTCCCGGTGGCCGAATTCTGAAATGGCCTCAGTTGAAGGTGTTCAGTTTTAAGGAGCTGAAATCTGCCACAAAGAATTTTAAATCCACCAGATTGGTCGGTAAAGGTAGGTTTGGCATAGTTTACAAAGGATGGTTGGATGAGAAGACCCTCACCCCCGCCAAACCAGGCTCTGGAGTTGGAGTTGCCATCAAAATGTCCAACACGAAAGGAACTCGAGGGTTTTTACTGTGGCAGTTTGAGATAAAGGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGCTATTGGGGTACTGTCAGGACGAGGATCAGTTTCTTCTTGTGCATGAGTTCATGCCGAAGGGAAGCCTCAAGTGTCATCTCTTCGAAACAGCAATTCATGAACCACTTTCGTGGAACACCCGGCTTAAAATAGTTATAGGTGCATCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGTCATGTTCAAAGATTTCAACACCTCAAATATACTGCTCGACGGGAATTACAATGCAAAAATAGCAGACTTTTGGTTGGGTGAAGGGCGTCCTGCGGAAGAACAATCATATGCAACTAGAAGTTTCACGGATAGTCATCTTGCACCAGAATATACCATAACAGGAAAGTTGTATGTGGAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGCAATTGACTTTAAAAGGCCAACAGGGCAGCAGAACCTGGTTGATTGGACAAAAACTTGTCTCTCTTCCAAAAAGAAGTGGAAAAACATTATTGATGATAGGATAAAGGATCAAATTTCACCCAAGGCTGCGTTAGAATTAGCACAACTTGCTCTAAAATGCTTAGAGGAGAACCGTAAACAACGTCCTTCAATGAAAGAAGTTCTTGAAGGATTGGAAGCCATTGAAGACATCCATTGA 1071 0.4416 MGLGFSRAPTLGSSDIHDTTTTTIRKSQFSVREGIDSECSPLPFPGGRILKWPQLKVFSFKELKSATKNFKSTRLVGKGRFGIVYKGWLDEKTLTPAKPGSGVGVAIKMSNTKGTRGFLLWQFEIKVLGRLSHPNVVRLLGYCQDEDQFLLVHEFMPKGSLKCHLFETAIHEPLSWNTRLKIVIGASRGLAFLHANENKVMFKDFNTSNILLDGNYNAKIADFWLGEGRPAEEQSYATRSFTDSHLAPEYTITGKLYVESDVYGFGVVLLEILTGMRAIDFKRPTGQQNLVDWTKTCLSSKKKWKNIIDDRIKDQISPKAALELAQLALKCLEENRKQRPSMKEVLEGLEAIEDIH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00908 356 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Vimu11g00908 356 Gene3D Transferase(Phosphotransferase) domain 1 156 356 - -
Vimu11g00908 356 PANTHER OS01G0588500 PROTEIN-RELATED 31 352 - -
Vimu11g00908 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Vimu11g00908 356 ProSiteProfiles Protein kinase domain profile. 70 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00908 356 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Vimu11g00908 356 Gene3D Phosphorylase Kinase; domain 1 54 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00908 Vimu-Chr11 9402836 9404884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00908 46 355 Receptor kinase-like Gene Family AT4G02010 39.557 2.17e-72 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00908 PK_Tyr_Ser-Thr 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00908 - - vra:106765952 548.51