Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00907 ATGAGTGATACAAAAGAGAATGAAGAAGCAGGGCAGAATGTTCCGTTGGCTGCGGAAGAAGTTTTGGCTGAAGCACAAGTTGAACCAGAAGTTTTGGCTGCTCCTTTGTCCGTGGGGGATACTTCAAATCATGCTGAAAATGGGAAGGTGGAGGCACAGGCACCTGTGCAGGATAGAATTGTGAAACCAGAAGCCAATTCAGAGTGCATTCCGCAACAAGATGTCCTAAATAGTCAAAATTCATTAGAGTCGGTCCCTGTAATGGAAAATGTTCCAGTTTTAAATAAAGCTGAAGGTGAAAATGCATTAGATGTGAAGAGCAAAGTAGAAGAACTTCCTCAGAGTGATAAGGACATAGCGAATGATTCTAATGTTTGTCAAAACAATGCTGATCCTGCTGAGATGACTGTGGAGGTGAAGCCCAAAGCTTTCGAAGCGGCTGAAAGTAAAACTTGCAATAATGGGGACTCCAAATCCGCACACCCCATTCATAACGAACCTAAAACGCCTCATGTTGTTCAGACTGATATAAGAGCTGAAGTTAAGAGTGGATTAGACGATGAGAATAAGTATAATGAAAGGCAGGCTGCTGTTGCACATGCAGATAATGGAAACTTGATCTCACAGAACTTGTATTTTTTGGATCCTGAGTATTCATATGATGGTAATGAGTCGGGAACAGAAGATGAACAGTCAGCTTTTATGAAGGAGCTTGAAACATTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTTTATAAAGAGGGGCTTAATTGCCTTAAGCTATGGAGATCTGTTAACAGACTGGGCGGCTATGATAAGGTCACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGTACAACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCTCTTCTTGACTATGAAAGGCATAAAACAAAAGGTGGTGAGCTGAATGTGCCCATTACTTCTAATTCAGAGCCAATGAATATTGAAAATCAGTGTGTCCAAGGATTAGCTTCGTCAGGTAGGGCACGTAGAGATGCTGCGGCTAGGGCTATGCAGGGTTGGCATTCTCAACGTCTTCTGGGCAATGGTGAAGTTAGTGATCCTATTATTAAGGACAGGAGCTCTTTGTCTATGCAAAAGCGTGAAAAGCAGCTTAGAAGCATCAATGTACTTAAACGCAAGAAATCATCAGACATGGTAAATGCAGTCAAAGTTGCTCACAGTAATAAACCATCTAAACCACAGTTAAGACACGTTACTTTCTTTCTCTTTTTATCATGA 1308 0.4167 MSDTKENEEAGQNVPLAAEEVLAEAQVEPEVLAAPLSVGDTSNHAENGKVEAQAPVQDRIVKPEANSECIPQQDVLNSQNSLESVPVMENVPVLNKAEGENALDVKSKVEELPQSDKDIANDSNVCQNNADPAEMTVEVKPKAFEAAESKTCNNGDSKSAHPIHNEPKTPHVVQTDIRAEVKSGLDDENKYNERQAAVAHADNGNLISQNLYFLDPEYSYDGNESGTEDEQSAFMKELETFFRERSMEFKPPKFYKEGLNCLKLWRSVNRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHKTKGGELNVPITSNSEPMNIENQCVQGLASSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRSSLSMQKREKQLRSINVLKRKKSSDMVNAVKVAHSNKPSKPQLRHVTFFLFLS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00907 435 SMART ARID_2 225 315 - -
Vimu11g00907 435 FunFam AT-rich interactive domain-containing protein 3 228 327 - -
Vimu11g00907 435 CDD ARID 230 315 - -
Vimu11g00907 435 Pfam ARID/BRIGHT DNA binding domain 231 315 IPR001606 GO:0003677
Vimu11g00907 435 Gene3D - 228 327 IPR036431 GO:0003677
Vimu11g00907 435 ProSiteProfiles ARID domain profile. 228 319 IPR001606 GO:0003677
Vimu11g00907 435 SUPERFAMILY ARID-like 223 330 IPR036431 GO:0003677
Vimu11g00907 435 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 86 420 IPR045147 GO:0006357
Vimu11g00907 435 SMART bright_3 229 320 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00907 Vimu-Chr11 9373992 9382610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00907 212 408 ARID Transcription Factor Family AT1G76510 56.566 4.91e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu11g00907 ARID 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00907 - - gmx:100803374 647.891