Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00892 ATGACACGCGCTCTCAGACTCCTCCACTCCCAAGCGGCGCCACCTCCTGAGGCCGCCGCCGTCGAGTCCGACTTCGTCGTCATCCTGGCGGCGCTCCTCTGCGCTCTCATTTGCGTGGTGGGCCTCGTCGCCATCGCCCGCTGCGCCTGGCTCCGTCGGGCACCAGCTTCTGTCGGCGCCGCTGGATCTCCGCCGGCGCCCGCCAACAAGGGACTTAAGAAGAGAGTGGTGAATTCGCTGCCGAAGTTCACGTACGCCGGTGAAGGTGATCGCTGCAAGTGGTCGGAGTGCCCGATCTGCCTGACGGAATTTTCCGGCGGCGACGAGGTCCGTGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGCGTGCGTGGACACGTGGCTCTCTTCGCACTCGTCGTGCCCCTCGTGCCGCGCGCCTTTCGTAGTCACCCGATGCCAGAAGTGCGGCCACTTCCCGGCAGTCGCAGCCGAATCCAGCGAACCGGAGACGAAACCTGGTGTCGGCTGCAATGCCGATGATAATCGTAATGTAATTGTTAACCACGGGTTTAGTAATTACGGTTTCTTGCCATGA 579 0.6321 MTRALRLLHSQAAPPPEAAAVESDFVVILAALLCALICVVGLVAIARCAWLRRAPASVGAAGSPPAPANKGLKKRVVNSLPKFTYAGEGDRCKWSECPICLTEFSGGDEVRVLPQCGHGFHVACVDTWLSSHSSCPSCRAPFVVTRCQKCGHFPAVAAESSEPETKPGVGCNADDNRNVIVNHGFSNYGFLP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00892 192 SMART ring_2 97 138 IPR001841 -
Vimu11g00892 192 CDD RING-H2_EL5-like 96 139 - -
Vimu11g00892 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Vimu11g00892 192 Pfam Ring finger domain 96 139 IPR001841 -
Vimu11g00892 192 SUPERFAMILY RING/U-box 79 145 - -
Vimu11g00892 192 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vimu11g00892 192 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00892 Vimu-Chr11 9237760 9238338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00892 1 150 C3H Transcription Factor Family AT1G20823 60.366 8.22e-59 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00892 - - gmx:100786769 283.493