Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00881 TTGATACTGGCTTCGCAAAAGGCAACCGCAACCATGACTAGAGTTGAGATTATGGTGTTGATGGTTCTCTTTGAAGGGTTATTTTCAGCTGGAGCTGTATCAGATAATTCCACAATACCTGCTTTGGTAAACATTGGAGTTCTCTATTCTTTCAATACCAGTGTTGGTAAAATGGTCAAAACTGCTGTAGAAGCGGCGGTTGAAGATGTAAATTCTGACCCATCTATTCTTGCTCAAACTAAGTTGAAGCTCTCAATGCAAGAAGATACCAAATACAGAGGATTTTTGAGCATTGCTGAGGCCTTGCAGCTCATGGCGACACAAACTGTGGCTATAATTGGCCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCCAATGAGCTCCAAGTTCCTCTGCTATCATTTACAGCCACTGACCCTACCCTTTCTTCTCTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACGTCTATGAGATGACTGCAATAGCAGACCTTGTTAACTACTTTCAATGGAGAGAGGTTATTGCAGTTTATGGTGACGATGACCATGGGAGGAATGGAATGGGTGCATTAGGGGATAAGCTTGCCGAGAGGCGTTGCAAGATTTCATTTAAAGCACCTATGACTCCTGAGGCAACTAGAGAGGAGATTACTGATGTACTTGTTCAGGTGGCCCTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTCTTAAGTGTGGCAAAGTCTCTGGGAATGATGGAAAATGGTTATGTCTGGATAACAACTACTTTTCTGTCTACTTGGCTGGATATACGTAGTCCCCTATCTCCAGATGCAACCAGTGACATGCAAGGGGTCATTGCACTACGTATGTATGTACCAGATTCAAAGCTCAAAAGATGGTTTATTTCTAGATGGACAAACATGACTACTTCTGGAAAGAATGGTAATGGCACCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTTTGCTCTTGCTCATGCACTTGATGCATTTTTCAAACGAGGGAATCAAATTACATTTTCACATGATCCAAAGTTATCTCAAATACGTGGAGACAACATGCATCTTGATGCTGTGAAGATCTTTAACGAAGGAAATCTGCTGCGTAAACATATTTATGAGGTTAATATGACTGGAGTATCAGGCCTGTTCAAGTATGATTCTGATGGAAACCTTGTTAATCCAGCTTATGAAATCATCAATGTGATTGGAACAGGAACACGGAGGATTGGTTATTGGTCTAATTACACTGGATTATCCGTTGCTCATCCAGAAACACTTTATTCAAAGCCACCCAATCGATCCAGTGCAAGCCAAAATCTACTCCCTGTGTTTTGGCCAGGAGAAACAACCCAAAAGCCCCGTGGTTGGGTTTTTCCAAATAATGGAAGGATGTTAAAAATTGGAGTGCCAAAGAGGGTTAGTTACCGGGATTTTGTCTCTCAAGTACAAGGAACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGGGATGGTGACAGAAATCCTAGTAATACTGAACTTGTCCGTCTTATAACAGCGGATGTTTTTGATGCTGCAGTAGGTGACATTACAATTACAACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTGGTGGTAGTAGCATCAGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTTAAACCATTTACGCCAATGATGTGGGCTGTCACAGCTATCTTTTTTCTATTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGACTGAATGATGATTTTAGGGGAACTCCCAAACAACAAATGGTCACAATTTTGTGGTTTAGTTTTTCGACCATGTTCTTCGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGTTATTTGTAGTTCTAATTATTAACTCAAGTTACACAGCTAGCCTGACATCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGACAGCTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCATTTACTCGAACTTATTTGATTGAAGAAATTGGTATTGATGAATCCAGACTGGTTCCTCTAAAAACAGCGGAAGAAACTGCAACAGCACTAAAAAATGGTCCCCAGAAGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAACTTTTCCTTTCAAGCCGTTGCGAATTTAGCATTGTAGGTCAGGAGTTCACCCGAAATGGTTGGGGATTCGCCTTTCCAAGGGACTCACCGTTAGCAGTTGATCTTTCAACTGCCATATTGGAGTTGGCAGAGAACGGAGACTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCCTGCTTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAAGCTGAGAAGCTTCTGGGGCCTCTATCTGGTGTGTGGGTTGGCATGTGTACTTGCTCTTCTCATATATGTTGTTCAGACCATGAGACAGTACTCCAAGCACGGCCCAGAGGAACTTGAGTCTTCTTCTGGCCATGGGTCAGGATCTTCACGTCTGCGCACATTCCTTTCCTTTGTAGATGAAAAGGAAGAGATTGTTAAGAACCGTGTGAAGAGAAAGAAAATAGAGGGCATGTCCTACAGGAGCACAAGAGAAGTAGGATCATCCATCAACTCCAACAAAGGATTTTCTCAGGCATCATCATACAGAATTGATTCAGCTACTGAAATCTAA 2856 0.4188 MILASQKATATMTRVEIMVLMVLFEGLFSAGAVSDNSTIPALVNIGVLYSFNTSVGKMVKTAVEAAVEDVNSDPSILAQTKLKLSMQEDTKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFTATDPTLSSLQFPFFIRTAFSDVYEMTAIADLVNYFQWREVIAVYGDDDHGRNGMGALGDKLAERRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWITTTFLSTWLDIRSPLSPDATSDMQGVIALRMYVPDSKLKRWFISRWTNMTTSGKNGNGTLGLSTYGIFAYDTVFALAHALDAFFKRGNQITFSHDPKLSQIRGDNMHLDAVKIFNEGNLLRKHIYEVNMTGVSGLFKYDSDGNLVNPAYEIINVIGTGTRRIGYWSNYTGLSVAHPETLYSKPPNRSSASQNLLPVFWPGETTQKPRGWVFPNNGRMLKIGVPKRVSYRDFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFVSYGDGDRNPSNTELVRLITADVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFFKPFTPMMWAVTAIFFLLVGAVVWILEHRLNDDFRGTPKQQMVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIDSLINSKEPIGYLQGSFTRTYLIEEIGIDESRLVPLKTAEETATALKNGPQKGGVAAYVDERAYIELFLSSRCEFSIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLKLRSFWGLYLVCGLACVLALLIYVVQTMRQYSKHGPEELESSSGHGSGSSRLRTFLSFVDEKEEIVKNRVKRKKIEGMSYRSTREVGSSINSNKGFSQASSYRIDSATEI 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00881 951 Gene3D - 61 412 - -
Vimu11g00881 951 FunFam Glutamate receptor 721 828 - -
Vimu11g00881 951 CDD GluR_Plant 482 824 - -
Vimu11g00881 951 CDD PBP1_GABAb_receptor_plant 44 439 IPR044440 -
Vimu11g00881 951 MobiDBLite consensus disorder prediction 927 951 - -
Vimu11g00881 951 SMART GluR_14 485 826 IPR001320 GO:0015276|GO:0016020
Vimu11g00881 951 Gene3D - 159 437 - -
Vimu11g00881 951 Gene3D - 595 723 - -
Vimu11g00881 951 Pfam Bacterial extracellular solute-binding proteins, family 3 541 824 IPR001638 -
Vimu11g00881 951 PIRSF IGluLR_plant 12 949 IPR017103 -
Vimu11g00881 951 SUPERFAMILY Periplasmic binding protein-like I 40 476 IPR028082 -
Vimu11g00881 951 Pfam Ligand-gated ion channel 825 857 IPR001320 GO:0015276|GO:0016020
Vimu11g00881 951 FunFam Glutamate receptor 479 595 - -
Vimu11g00881 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Vimu11g00881 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 335 347 - -
Vimu11g00881 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Vimu11g00881 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 893 IPR015683 -
Vimu11g00881 951 FunFam Glutamate receptor 159 314 - -
Vimu11g00881 951 Gene3D - 768 831 - -
Vimu11g00881 951 Gene3D - 479 594 - -
Vimu11g00881 951 SUPERFAMILY Periplasmic binding protein-like II 459 826 - -
Vimu11g00881 951 Pfam Receptor family ligand binding region 59 422 IPR001828 -
Vimu11g00881 951 FunFam Glutamate receptor 595 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00881 Vimu-Chr11 9121964 9126031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00881 18 915 Ion Channels AT3G51480 58.287 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00881 K05387 - gmx:100788917 1669.44