Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00880 ATGTTCCCAGTAAAATATAACATGAGCAAAGTTTGGGTTCTTGCCCTTCTCATCCTCTACAGTGCCTTTCCCTCAAAAGGAATCGCCATTGTTTCTACAAGACCAAGTGCCGTTAATATTGGGGCAATTTTATCTTTCGACTCTATTGTTGGAAGAGTGGCTAAAGTTGCCATGCAAGCAGCAGTTGATGATGTAAATTCCAATCCAACCATTCTCAACGGAACTAAGCTTAATATCTCAATGTTTGACACCAGATTATCCACTGGATTCCTGGGAATCATTGCTTCACTGAGGTTGATGGCGAGTGACACTGTGGCCATAATTGGTCCCCAGTACTCGGTCATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCTGCGACAGACCCTACACTGACCTCAATGCAGTTCCCATATTTTGTGAGGACCACGCAAAGTGATCGGCATCAGATGGCTGCTGTGGCAGAACTTGTTGTTCACTTTCAATGGAGAGATGTCATAGCCATTTTCGTAGATGATGACCATGGAAGAAATGGAGTGGCTGCCTTAGGAGATAAGCTGGCAGAGAAACATGGTAAAATCTCACACAAAGTGCCCTTTAGGCCATGTAATATAACCCGAGAAGAAATAAACAGTGCATTAGTTAAGGTAGCAGCACTAATGGAATCAAGAGTAATAATCCTTCACATATACCCTTCTTTTGGTTTAGAAGTACTTCATGTGGCTCAATCACTTGGCATGATGCAAAGTGGTTATGTGTGGATAGCCACAGATTGGCTAACCACACTATTAGATTCCGACCCATCCCTGTTCATATCTCCAGCCATGAATGACATCCAAGGTGTTGTCACCTTGCGCATGCATACGCCAGATTCAGACATAAAGGACAAATTTATTTCTAGATGGACCAAACTGATCAAGAAAGAAAATCCTAATCAGGATCCTTTTGGATTAAACATCTTTGGTCTTTACGCGTATGACACTGTTTGGGCACTGGCTTATGCACTTGATGCACTTTCAAAGGATGGAGGAACTTTGTCGTTTTCAAATGATTCGAGAGTAATTAACAACATGTTAACTGGGGACATCCTTCACCTAGATGCTATGAGGGTCTTCGTCAATGGTAGCATTTTGCTTAAAAAGATTTTAGAGTTGAACACGAGTGGTTTAACGGGCCAGATGATGTTTGACTCAGACGGAAATTTAATGCATCCATCGTATGAAATCATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGATACCTCTGGCCTCCACACTGAAGAAGCTCCTATTCATTCCAATTCTAGTGAAAGACTATATGATGTCATCTGGCCAGGTCAAACAACTCAAACACCACGCGGTTGGAGTCTTGCCAGCAATGGAAGACAGTTGAGAATTGGGGTGATAGTTAGAGTTACATTCCCCGAGATTGTGTCAAGAATTGAGGGTACCAATAAGCTTAGTGGTTTTTGCATAGATGTGTTTACTGCTGCAATGAACTTGTTGCCTTACCCAACACCATTCGAGTTTATTCCATTTGGTGATGGTAAAACCAACCCTTCCCATTCGGACTTTCTTCACATGGTCACAATTGGTGCGTTCGATGGTGTGGTGGGGGACATGACCATCAGTACAAGCCGAGCAAAGATAGTGGATTTTACACAGCCATATATTAACTCTGGGCTAGTTGTTGTGGCACCTGTCAAGAAGTTGAAATCCAGTGCTTGGGCTTTTCTCAGACCATTCACTCCAATGATGTGGTCTGTGACAGGAATGTTCCTCTTGGTGGTGGGAGCTGTCGTGTGGACTTTAGAGCGTGGTTTAGCTTCTCAACCCTATTTTCTACACAGAGTGAAAATCAGTGTAGTAAATTCAAGTCTTACTACATCTAACGAGGTTCCCTTGTATGCAGAAGAGAAGACTGTGAGCACTCTTGGTCGTTTCGTACTAATCATATGGCTGTTTGTGGTTTTGATACTGAACTCAAGTTATACTGCAAGCCTCACCTCTATCCTAACTGTGGAACACCTTTCATCCCAAGTCAAGGGAATTGAAAGCTTAATAGCAAGTAATGAACCCGTTGGTTACGTGAAGGATACATTTACTGAAAATTATATAACTGCGGAACTACACATGGACAGATCCAGGCTTGTTCCTCTGAACTCCATGTTAGAATATGAAAAAGCCTTAAAAGATGGACCAGGTGGTGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATATAGTATTGTTGGTAAAGAGTTCACCAAGAGCGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCCTAGCAGTTGACATGTCAACGGCCATCCTAAAACTATCAGAGAGTGGTGATCTTCAGAGAATTCATGATAAATGGCTAACAGGAATGGCTTGCAGCTCAGAAGGAGCAAAAGAAAGCATTGATCGACTTGAGCTGAAAAGCTTTTGGGGGCTTTACTTGCTGAGTGGCATAGCCTGCTTCATTGGTCTCCTTTGCTATGTCATTAGATTGATCTATCGTTTTAACAGGCACTCTAACAGTAACCTTGAAGGCTCATCATTCTCTTCTCATCTTCGATCGTTCCTTTCCTTTGCTAATAAAAAAGAAGCAGGACAAAAGGACAACTGTCCTTGTACAAAGGTAGTAGTGCATGAAGATGGATCTTAA 2745 0.4248 MFPVKYNMSKVWVLALLILYSAFPSKGIAIVSTRPSAVNIGAILSFDSIVGRVAKVAMQAAVDDVNSNPTILNGTKLNISMFDTRLSTGFLGIIASLRLMASDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSMQFPYFVRTTQSDRHQMAAVAELVVHFQWRDVIAIFVDDDHGRNGVAALGDKLAEKHGKISHKVPFRPCNITREEINSALVKVAALMESRVIILHIYPSFGLEVLHVAQSLGMMQSGYVWIATDWLTTLLDSDPSLFISPAMNDIQGVVTLRMHTPDSDIKDKFISRWTKLIKKENPNQDPFGLNIFGLYAYDTVWALAYALDALSKDGGTLSFSNDSRVINNMLTGDILHLDAMRVFVNGSILLKKILELNTSGLTGQMMFDSDGNLMHPSYEIINVIGSGIRRIGYWSDTSGLHTEEAPIHSNSSERLYDVIWPGQTTQTPRGWSLASNGRQLRIGVIVRVTFPEIVSRIEGTNKLSGFCIDVFTAAMNLLPYPTPFEFIPFGDGKTNPSHSDFLHMVTIGAFDGVVGDMTISTSRAKIVDFTQPYINSGLVVVAPVKKLKSSAWAFLRPFTPMMWSVTGMFLLVVGAVVWTLERGLASQPYFLHRVKISVVNSSLTTSNEVPLYAEEKTVSTLGRFVLIIWLFVVLILNSSYTASLTSILTVEHLSSQVKGIESLIASNEPVGYVKDTFTENYITAELHMDRSRLVPLNSMLEYEKALKDGPGGGGVAAIIDERAYMELFLATRCEYSIVGKEFTKSGWGFGFPRESPLAVDMSTAILKLSESGDLQRIHDKWLTGMACSSEGAKESIDRLELKSFWGLYLLSGIACFIGLLCYVIRLIYRFNRHSNSNLEGSSFSSHLRSFLSFANKKEAGQKDNCPCTKVVVHEDGS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00880 914 Gene3D - 56 412 - -
Vimu11g00880 914 Gene3D - 473 587 - -
Vimu11g00880 914 Gene3D - 767 826 - -
Vimu11g00880 914 Pfam Receptor family ligand binding region 56 422 IPR001828 -
Vimu11g00880 914 PIRSF IGluLR_plant 6 913 IPR017103 -
Vimu11g00880 914 CDD GluR_Plant 475 819 - -
Vimu11g00880 914 Gene3D - 588 711 - -
Vimu11g00880 914 Pfam Bacterial extracellular solute-binding proteins, family 3 493 820 IPR001638 -
Vimu11g00880 914 Gene3D - 154 437 - -
Vimu11g00880 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 112 140 - -
Vimu11g00880 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 51 67 - -
Vimu11g00880 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 333 345 - -
Vimu11g00880 914 FunFam Glutamate receptor 472 588 - -
Vimu11g00880 914 SMART GluR_14 476 821 IPR001320 GO:0015276|GO:0016020
Vimu11g00880 914 FunFam Glutamate receptor 154 314 - -
Vimu11g00880 914 CDD PBP1_GABAb_receptor_plant 39 437 IPR044440 -
Vimu11g00880 914 Pfam Ligand-gated ion channel 821 852 IPR001320 GO:0015276|GO:0016020
Vimu11g00880 914 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 875 IPR015683 -
Vimu11g00880 914 FunFam Glutamate receptor 716 823 - -
Vimu11g00880 914 SUPERFAMILY Periplasmic binding protein-like I 34 468 IPR028082 -
Vimu11g00880 914 SUPERFAMILY Periplasmic binding protein-like II 455 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00880 Vimu-Chr11 9079994 9083531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00880 12 899 Ion Channels AT3G51480 52.285 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00880 K05387 - gmx:100789442 1323.53