Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00879 GAAAAATATAACATGAACAAAGTTTTGCTTCTTTTCCTTGTCGTCTTCTACAGTGGCTTTCCCTCTAAAGGAATAAGCTCTGTTTCTACAAGACCACTTGCTGTTAACATTGGGGCAATTTTATCTTTCAATTCCACAATTGGAAGAGTAGCTAAAATTGCCATACAAGCTGCAGTGGATGATATAAATTCTAATCCAACCATTCTCAACGGAACTAGGCTTAAGATTTCAATGCTAGACACCAAATTATCCGCTGGATTTTTAGGAATCATTGATTCGTTTCTGCTGATGGAGCGTGAAACTGTAGCCATAATAGGTCCCCAGTACTCAGTAATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCAGCAACAGACCCTACGCTGACTTCACTGCAGTTCCCATATTTTGTTCGGACAACGCAGAGTGATATGTATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATCGATGATGATCATGGAAGAAATGGGGTGTCTGCTTTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCACACAAAGCACCACTTAATCCTGGTAACATTACTCGGGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTAATGCAATCAAGGGTAATAGTCCTTCATATATACCCTTCTTTTGGTCTAGATGTATTGAATGTGGCTGGTTCACTTGGCATGATGGGAAGTGGCTATGTGTGGATAGCCACAGATTGGCTTTCTACGTTATTAGATTCAAACCCATCATTGTTCACCACTCAATCCATAAATGACATCCAAGGTCTTATCACCTTGCGCATGTATACCCCTGAGTCAGAAATCAAAAGAAAATTTCGTTCTAGCTGGAACAAAGTGAGCAAGGAAAAGGATCCTGTTGAGGGTCCTTTCGCATTGAACACCTTTGGCTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCGTTTTTCAGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGAGGAAGTTTTGAGCTTGATAACATGGGAGTGTTTCTTGATGGTGAGAAGCTGCTTAAAAAAATTTTAGAGGTGAACAGAAGTGGTCTAACAGGGGAAATGATGTTTGGACAAGATGGAAACTTGGTGCATTCATCGTATGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGTGTCATCTGGCCTGGTCAAACCACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAGCTTGTTGCCTTATTCCGTTCCCTACAAGTTTGTTTCATTTGGAGATGGTAAAACCAACCCATTAAATTCAGATCTTCTTCACATGATAACAGTCGGTGCCTTCGATGCTGTGGTGGGAGACATAACCATTACTACTAACCGAACCAAGATAGTGGACTTTACTCAGCCATATATTGAATCTGGGCTAGTTGTTGTGGCTCCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTAACACCATTCAGTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCTGCCAGAAGACAATTTGTCACCATCATTTGGTTTAGCTTCTCAACCCTATTTTTTGCACATAGAAAAAACAAAACCTTGTATGCAGGAGAAAAAACTGTTAGCACCCTTAGTCGGTTTGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCAAGTCTGACCTCTATCCTAACAGTGGAACAACTCTCTTCACCTATTAAAGGAATCGAAAGCTTAGTAATAAGCAACGATCGTATTGGTTTCCTGAGGGGTTCATTTGCTGAGAATTATCTGACCGAGGAGCTGAACATACACAGTTCCAGGCTTGTTCCTCTGAACTCCCCATCAGAATATGAAAAATCCTTGAAGGATGGAGCAGCTAACGGTGGTGTTGCTGCAATAATAGATGAACGTGCATATATGGAACTCTTCCTAGCCACCAGATGTGAATTTGGTATCGTGGGTCAGGAGTTCACCAAGATGGGATGGGGCTTTGGCTTTCCAAGGGAATCTCCTTTATCAATTGATATGTCAACAGCCATCCTTAAACTATCAGAAAATGGTGACCTGCAAAGAATTCATGACAAATGGCTGACGAGAAGTGCGTGCAGTTCAGAGGGTGCAAAACAAGGCATAGAGAGACTTGAGCTAAACAGTTTTTGGGGTCTGTTCCTACTTAGTGGCATAGCATGCTTCGTTGCTCTACTATGTTATGGTATTAGAATGGTTTACCGTTTTAGCAGAGACTCCAACAGTAACCTTGAGCGCTCATCTCACTCTGATCGTCTCCGATCGTTCCTTTCCTTTGTGAATGAAAGAGAAGGGGAAGACAAATACAGGCCAAAGAGGAGGCGAAAGGTAGTGCATGAAGGTGGATCTTTGGATGACTCAACTGTTATTGTCCACATAGAAAATAATCCCAGTGCACAAGATTAA 2799 0.4184 EKYNMNKVLLLFLVVFYSGFPSKGISSVSTRPLAVNIGAILSFNSTIGRVAKIAIQAAVDDINSNPTILNGTRLKISMLDTKLSAGFLGIIDSFLLMERETVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDMYQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSALGDKLAEKRGKISHKAPLNPGNITREEINSALVKIALMQSRVIVLHIYPSFGLDVLNVAGSLGMMGSGYVWIATDWLSTLLDSNPSLFTTQSINDIQGLITLRMYTPESEIKRKFRSSWNKVSKEKDPVEGPFALNTFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSLNMLRGGSFELDNMGVFLDGEKLLKKILEVNRSGLTGEMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYSVPYKFVSFGDGKTNPLNSDLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFSPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTIIWFSFSTLFFAHRKNKTLYAGEKTVSTLSRFVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLVISNDRIGFLRGSFAENYLTEELNIHSSRLVPLNSPSEYEKSLKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRESPLSIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIERLELNSFWGLFLLSGIACFVALLCYGIRMVYRFSRDSNSNLERSSHSDRLRSFLSFVNEREGEDKYRPKRRRKVVHEGGSLDDSTVIVHIENNPSAQD 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00879 932 PIRSF IGluLR_plant 3 926 IPR017103 -
Vimu11g00879 932 Pfam Ligand-gated ion channel 821 852 IPR001320 GO:0015276|GO:0016020
Vimu11g00879 932 SUPERFAMILY Periplasmic binding protein-like I 34 462 IPR028082 -
Vimu11g00879 932 CDD PBP1_GABAb_receptor_plant 36 431 IPR044440 -
Vimu11g00879 932 Gene3D - 736 826 - -
Vimu11g00879 932 SMART GluR_14 472 821 IPR001320 GO:0015276|GO:0016020
Vimu11g00879 932 FunFam Glutamate receptor 716 823 - -
Vimu11g00879 932 Gene3D - 582 723 - -
Vimu11g00879 932 Pfam Bacterial extracellular solute-binding proteins, family 3 530 820 IPR001638 -
Vimu11g00879 932 Gene3D - 53 406 - -
Vimu11g00879 932 Gene3D - 471 581 - -
Vimu11g00879 932 FunFam Glutamate receptor 466 582 - -
Vimu11g00879 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 875 IPR015683 -
Vimu11g00879 932 CDD GluR_Plant 469 819 - -
Vimu11g00879 932 FunFam Glutamate receptor 582 720 - -
Vimu11g00879 932 Pfam Receptor family ligand binding region 53 416 IPR001828 -
Vimu11g00879 932 Gene3D - 151 431 - -
Vimu11g00879 932 SUPERFAMILY Periplasmic binding protein-like II 447 821 - -
Vimu11g00879 932 FunFam Glutamate receptor 151 311 - -
Vimu11g00879 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 109 137 - -
Vimu11g00879 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 48 64 - -
Vimu11g00879 932 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00879 Vimu-Chr11 9065491 9068955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00879 16 919 Ion Channels AT1G42540 56.958 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00879 K05387 - gmx:100789442 1537.7