Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00878 ATGCCTTTCTTATGTTCTTGCGCTACAGGGAAATACACCATGAGAAAGATTTGGCTTCTTGTCCTCCTCATCTTCTACCATGCCTTTCCTTCAAAGGGAATCAGCAGTATTTCTACAAGACCAAGAACTGTTAACGTAGGCGCTCTCATGTCCTTCAATTCAACAGTTGGGAGAGTGGCTAAGGTTGCTATACAAGCTGCAGTGGATGATGTCAACTCAGATGCCACTATTCTTAATGGAACTGAGTTAAAGATTTTAATGTTGGACACCAAATTATCCACTGGGTTCCTGGGAATCGTTGACTCATTAAGATTGATGGAGAATGACACTGTGGCCATAATTGGTCCCCAGTTCTCCGTGATGGCTCATGTAATTTCACACATTGCAAATGAGATGCAAGTGCCTCTCCTATCATTTGCAGCCACGGACCCTACACTCACTTCATTGCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTGCATCAGATGACTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTCATAGCCATTTACATCGATGATGATCATGGAAGAAATGGGGTGTCTGCTTTAGGGGATAAGCTAGCAGAGAAACGTGGTAAATTATCACACAAAGCACCACTTAAGCCTGGTAACATTACTCGGGAAGATATAAACAGTGCATTAGTTAAGATAGCTCTAATGGAATCAAGGGTAATAGTCCTTCACATATACCCTTCTTTTGGTCTAGATGTATTGAATGTGGCTCGTTCACTTGGCATGATGGGAAGTGGCTATGTGTGGATAGCCACAGATTGGCTTTCTACGTTATTAGATTCAAACCCATCATTGTTCACCACTGAATCCATAAATGACATCCAAGGTCTTATCACCTTGCGCATGTATACCCCTGAGTCAGAAATCAAAAGAAAATTTATTTCTAGCTGGAACAAAGTGAGCAAGGAAAAGAATCCTGTTGAGGGTCCTTTCGCATTGAACACCTTTGGCTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCGTTTTTCAGGAGTGGGGGAACATTGTCATTTTCAAACGATTCAAGTTTAAACATGTTAAGGGGGGGAAGTTTTGAGCTTGATAGCATGGGAGTGTTTCTTGATGGTGAGAAGCTGCTTAAAAAAATTTTAGAGGTGAACAGAAGTGGTCTAACAGGGGAAATGATGTTTGGACAAGATGGAAACTTGGTGCATTCATCGTATGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGTGTCATCTGGCCTGGTCAAACCACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCTCTCAGCTTGTTGCCTTATCCCGTTCCCTACAAGTTTTTTTCATTTGGAGATGGTAAAACCAACCCACCAAATACAAAACTTCTCAACAAGATCACTATTGGGGAGTTCGATGCTGTTGTGGGGGACATTACCATTACCACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCGGGGCTAGTTGTTGTGGCACCTATAAGGAAGATGAAATCCAGTGCTTGGGCTTTCCTGAGACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTTGTATGGATTCTGGAGCGTCGCTTAAATGATGACTTCAGAGGCCCAGCTAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTTCTCATCGAGAGAAAACTGTGAGCACCCTTGGTCGCTTAGTGCTGATCATATGGCTATTTGTGGTTTTGATACTGAACTCAAGCTACATTGCAAGCCTCACCTCCATCCTAACTGTGGAACAGCTCTCATCCTCGGTTAAGGGAATTGAAAGCTTAGCAACAAGTGATGAACGGATTGGTTTCCCCAGTGGCTCCTTTGCTGAAAATTATCTGACAGAGGAGCTCAACATACACAGATCAAGGCTTGTTCCTCTGAACTCCCCATCAGACTATGAAAGGGCCTTGAAAGATGGTCCTGCTAATGGAGGTGTCACTGCCATAATAGATGAACGTGCATACATGGAACTCTTCCTGGCTACCAGATGTGAATACGGTATTGTTGGGCAAGAGTTCACCAAGATGGGATGGGGCTTTGCCTTCCCAAGAGATTCTCCCTTGGCAATTGACATGTCCACTGCCATCTTAAAACTTTCGGAGAATGGTGATCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCATGTAGCTCAGAGGGTGCAAAACAAGGCATAGACAGACTTGAGCTAAAAAGCTTTTGGGGTCTGTTCCTACTTAGTGGCATAGCATGCTTCGTTGCTCTTCTTTGCTATGTTGCAAGGATGGTCTACCGATTTAGCAGACACTCCAACAGTAACTCCGAAGGCTCTTCACACTCCGCTCGTCTTCGATCATTCTTTACCTTTATGAATGAAAGAGAAGAGGAAGACATACATATGTCAAAGAGAAAACGAACGGAAAAGGGATCAAGTGGAAGGGTGGCGCATGATGAAGAATTGGATGTTCAAAATTATACCAGAGGCTAA 2793 0.4314 MPFLCSCATGKYTMRKIWLLVLLIFYHAFPSKGISSISTRPRTVNVGALMSFNSTVGRVAKVAIQAAVDDVNSDATILNGTELKILMLDTKLSTGFLGIVDSLRLMENDTVAIIGPQFSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLHQMTAVAEIVDHFQWRDVIAIYIDDDHGRNGVSALGDKLAEKRGKLSHKAPLKPGNITREDINSALVKIALMESRVIVLHIYPSFGLDVLNVARSLGMMGSGYVWIATDWLSTLLDSNPSLFTTESINDIQGLITLRMYTPESEIKRKFISSWNKVSKEKNPVEGPFALNTFGFYAYDTVWVLASALDAFFRSGGTLSFSNDSSLNMLRGGSFELDSMGVFLDGEKLLKKILEVNRSGLTGEMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYPVPYKFFSFGDGKTNPPNTKLLNKITIGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGMFFLVVGAVVWILERRLNDDFRGPARRQFVTIIWFSFSTLFFSHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSSVKGIESLATSDERIGFPSGSFAENYLTEELNIHRSRLVPLNSPSDYERALKDGPANGGVTAIIDERAYMELFLATRCEYGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLSGIACFVALLCYVARMVYRFSRHSNSNSEGSSHSARLRSFFTFMNEREEEDIHMSKRKRTEKGSSGRVAHDEELDVQNYTRG 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00878 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Vimu11g00878 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Vimu11g00878 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Vimu11g00878 930 FunFam Glutamate receptor 475 591 - -
Vimu11g00878 930 CDD GluR_Plant 478 820 - -
Vimu11g00878 930 PIRSF IGluLR_plant 13 929 IPR017103 -
Vimu11g00878 930 FunFam Glutamate receptor 160 320 - -
Vimu11g00878 930 SUPERFAMILY Periplasmic binding protein-like II 456 822 - -
Vimu11g00878 930 Gene3D - 591 715 - -
Vimu11g00878 930 SMART GluR_14 481 822 IPR001320 GO:0015276|GO:0016020
Vimu11g00878 930 Gene3D - 62 415 - -
Vimu11g00878 930 Pfam Bacterial extracellular solute-binding proteins, family 3 537 821 IPR001638 -
Vimu11g00878 930 Gene3D - 160 440 - -
Vimu11g00878 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 881 IPR015683 -
Vimu11g00878 930 MobiDBLite consensus disorder prediction 898 930 - -
Vimu11g00878 930 SUPERFAMILY Periplasmic binding protein-like I 40 471 IPR028082 -
Vimu11g00878 930 Gene3D - 480 590 - -
Vimu11g00878 930 FunFam Glutamate receptor 717 824 - -
Vimu11g00878 930 CDD PBP1_GABAb_receptor_plant 45 440 IPR044440 -
Vimu11g00878 930 Gene3D - 744 827 - -
Vimu11g00878 930 FunFam Glutamate receptor 591 721 - -
Vimu11g00878 930 Pfam Ligand-gated ion channel 822 853 IPR001320 GO:0015276|GO:0016020
Vimu11g00878 930 Pfam Receptor family ligand binding region 62 425 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00878 Vimu-Chr11 9048687 9052257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00878 18 907 Ion Channels AT3G51480 56.507 0.0 1057
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00878 K05387 - gmx:100790502 1612.43