Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00877 ATGTCGTGTTCTTCTTCATCTGGGTCTGAAGAGGACGATGAGGGGTTCGACTCCTACCGGAAAGGGGGGTACCACGCCGTCAGAATCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTGGGTTGGGGCCAGTTTTCCACAGTTTGGCTTGCCTATGATACTTCAACATCTGCATATGTTGCTCTTAAGATTCAGAAAAGTGCGGCCCAATTTGTTCAGGCTGCCCTTCATGAAATTGATGTTCTTGCATCCATTTCTGATGGCGTTGATGTTAATTCAAAATGCGTTGTCCAGTTGATTGATCACTTTAAGCACGCAGGTCCTAATGGTCAGCACCTATGCATGGTGATCGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATAAAGTATAACCGGTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCAATTGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTATCCACACTGACCTAAAACCAGAAAATGTTCTTCTGATTTCTACCATTGATCCCGCAAAAGACCCTGTTAAATCTGAAGTCAGTCCAATATTGGAGAGGCCTGAGGGAAGCATAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAATTGAAAAGAAGAGCTAGGAGGGCCGTTGCTAAAATCTCTGGAAGAACAGCTTCAATAGGAGGAGCAGAAGATCAAAAGTCTGTGAGAAATCTAGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCCGACAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTCGCGTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTATTTACGCCCAAAGTTGGACAAGGTTTTAGTGAGGATGAGGATCATCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCTCGGAAGGTTGCTACTGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGCGATCTGAAAAGAATTCGAAGACTAAAGTTTTGGCCACTTAGCAAATTGTTGGTTGATAGATACAAATTTTCGCAGAGTGATGCTCATGAATTTTCAGAGTTTCTTCTACCACTTCTGGATTTCGTCCCTGAGAAGCGGCCAACAGCACAGCAGTGTCTGCAACATCCATGGCTCCGGGGCACGGAGTCAAACGAAAAAAATGAATCCAGTGTGGAGAATGTGGGTGTTGGAATGAGCAATCTTAAAATCAAGGGGGCAAAGTGA 1326 0.4427 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTSTSAYVALKIQKSAAQFVQAALHEIDVLASISDGVDVNSKCVVQLIDHFKHAGPNGQHLCMVIEFLGDSLLRLIKYNRYKGLPLNKVREICNCILIGLDYLHREHGIIHTDLKPENVLLISTIDPAKDPVKSEVSPILERPEGSINGGVTSLIEKKLKRRARRAVAKISGRTASIGGAEDQKSVRNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKFWPLSKLLVDRYKFSQSDAHEFSEFLLPLLDFVPEKRPTAQQCLQHPWLRGTESNEKNESSVENVGVGMSNLKIKGAK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00877 441 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vimu11g00877 441 FunFam Serine/threonine-protein kinase SRPK 116 412 - -
Vimu11g00877 441 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Vimu11g00877 441 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 237 424 - -
Vimu11g00877 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vimu11g00877 441 FunFam Protein kinase superfamily protein 24 123 - -
Vimu11g00877 441 Pfam Protein kinase domain 251 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00877 441 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00877 441 CDD STKc_SRPK 27 412 - -
Vimu11g00877 441 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vimu11g00877 441 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00877 441 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00877 441 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00877 Vimu-Chr11 9038624 9042158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00877 4 427 EF-hand Containing Proteins AT5G22840 51.464 2.87e-172 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vimu11g00877 Pkinase 6.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00877 K08832 - gmx:100811724 777.319