Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00874 ATGGGAGGCTTATTGCACATGTTTGAGTTCAATCAGGGTAGGATGGCCAAGAAAATTCATGCTCATAAGAACAATAACGACGATATGGAAACATCTGGAAATGGCATGAAGCTGCAAGTAGAAACCTCTCAGGTCCACTGTGCAGAAGGAGAATTACAATACTCCTGTCAAGTAGAAGATGGCTGGTCAAAGAAAATTAGTCACTCAAATGTGGATTCAGTGAAAAAAGCGAGCAAAGAGGGTTTTTCCAAACAATCAGGCGCCAGAAGTAATGCCCCTAGCCTTGTGGCAAGGTTGATGGGGATAGACACTATGCCTTTACCGTTAGACACTAAATCTGTTGTTCCATTGGATGAAAGCACACATGAAAATATGGAGAGGAAGTTTTCAATGAAGAAAATGAATGGAAAAGGTTGGTTTGGTAGGGGTTCTTCAAACTTGAATTCTTTTAGCCATATGGAATTTGATTCATTTTATCAGCACATCGATGATGATGATGATGATGATGAAGATGAAGGTGGACATAGTTTTGGAGAACCGGAGCCAAGGGAACATCCTCAAGAAGAGGAACTCCAAAAATTCAAGAAAGAATTTGAAGAGTATCAATCAACAAGGTTTAAGGAGTGGCCGAAGGCTGTTGACATCGGAAGTGGTTCTAGCAGAATGCTTTCGCTTTCTCAAGAGAACCGGAGCAAGGAGAACATGCAACATATTTCGAGTTCAAAGACAGATAGCCACTCATTTAAGAAAAAAGAATCCTTTCCATCAAGAAGTCAAACACAAAGTAGGGACTTTGAGGAGTCTTTAATGATGAAATCCAAAAGCAGATTATTAGATATATGCACTTCTCCCACTCAGATAGTTATCTTGAAGCCTGGTTCTGAAAGGATTTGCAGTTGCAACCATGAAGAGAATTTCACAAGTTTGCATAGGAGAAAAGGTATAGAAGATTTTCTTGAGGAAGTGAGAGAGCGCTTGAAGTGTGAACTCCAAGGGATTAGAGCTAGTGGAATTGAGACACCTTTCAATGATAAATCTGATGCTAAAGAGGTCAGAGAAAGTATGACTAGAGATGCTGAACCTAATTTACTGCGCTCAGAATCAACAAGATCATACAAAAGTAAAATGCAGCTCAATGGACAAAGTTCCCCAGAATTTTTCAACATAGATACTAGGAGGTTCTTGTCAGAGAGGTTAAGAAATACTGTAAAAAATGAATTGCATTTGGACATTCCTGAAGTGGCTTGTTATTTAGAGAATGACAGAGTTAGACTAAAGCAAGATACTATAAAGGGTACAGATGACAAGAGCCAGCGAGGAGTTCTAAAAGAGAAAAAAGAATTACAAACATGTTCCAATAGACATAAATTAGATGACAACGTATTTCTCCACAAGGAGTTGTCACCTAGGAATCTTGAAAGATCCTTGTCTGCTCCTGCATCAGGAGCATCATTTGGAAGGCTTCTTTTGGAGGATCGCCACATTTTAACGGGTGCCCTTATTCAGAGGAAGCTTGAAGCTGCTGAAGCAAGGCTAGTGGGTGCTAAAAAACAGAAGAAAGATGGATTTAATATTAAAGAAAAACTTTCCAACTTTAAATATACTCTTGGTCTAAGAGGGAAGCTGTTTGGCAAAAGGATTATGTCAAAAGTAGAATCACATGGCAGCGAATATGGTGAAATTTTGAGAGATGCCAGGAGTGGACCAACTATTCTCATGAAATATGGTGGCAGACATGAGAACTCCACCGAGGTACCTCCTAGTCCTGCATCTGTGAGCAGCTGTGCTGATGAAGAACATTGGAGACAGATTGGGTATTCAAGTCTAACATCAACTCCAGATGCATCTTCATTAGATGATATTTTTGTTCCCAAGGTTTTTAGAGATATCAGCTCTGGTTTGAACGACCTAAAGAGGCAACTCAGTGAGCTTGATTCCGACGGCTATGTTGATTTCACTACAAAGCAGGAACCGATTGAGTCTTCATTAGTTGAATTGGATGATCCAGCAGAATCTTATGTAAGAGATCTGCTTGTTGCCTCTGGTTTGTACTTTGGTTCATGGGATAAATTTATTGGCAACTCAGTATTTGAAGAAGTGGAAGAATCTCATAGGAAATTGGTGAAGGAGGATGAAAGATCCAAAAAAGATGATAACAAGAATAAGTTAGAGCACAAGGTTTTGCTTGATTTGTTAAATGAGGCACTTTCTATTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGAAGGAAACTAAGCAATTCCTCCTTGCAGCCTCCACCATGTGGAAAGGAACTACTAAAGTTAGTATGGGACATTGTCCGTGTTTCTTTATATCCAACCTCTAACACATCTCTTTATTCAGTTGATAGTTTTTTGGCACAAGATCTAGGATCTATTTCCTGGTCTGGGCTAACAAACGATGAGATTGATACATTGGAAAGAGAGACTGCATGTACAATCGCCGATGATTTGGTTGAAGAATTCACAAAGGATATGCTCTTGTAG 2511 0.3947 MGGLLHMFEFNQGRMAKKIHAHKNNNDDMETSGNGMKLQVETSQVHCAEGELQYSCQVEDGWSKKISHSNVDSVKKASKEGFSKQSGARSNAPSLVARLMGIDTMPLPLDTKSVVPLDESTHENMERKFSMKKMNGKGWFGRGSSNLNSFSHMEFDSFYQHIDDDDDDDEDEGGHSFGEPEPREHPQEEELQKFKKEFEEYQSTRFKEWPKAVDIGSGSSRMLSLSQENRSKENMQHISSSKTDSHSFKKKESFPSRSQTQSRDFEESLMMKSKSRLLDICTSPTQIVILKPGSERICSCNHEENFTSLHRRKGIEDFLEEVRERLKCELQGIRASGIETPFNDKSDAKEVRESMTRDAEPNLLRSESTRSYKSKMQLNGQSSPEFFNIDTRRFLSERLRNTVKNELHLDIPEVACYLENDRVRLKQDTIKGTDDKSQRGVLKEKKELQTCSNRHKLDDNVFLHKELSPRNLERSLSAPASGASFGRLLLEDRHILTGALIQRKLEAAEARLVGAKKQKKDGFNIKEKLSNFKYTLGLRGKLFGKRIMSKVESHGSEYGEILRDARSGPTILMKYGGRHENSTEVPPSPASVSSCADEEHWRQIGYSSLTSTPDASSLDDIFVPKVFRDISSGLNDLKRQLSELDSDGYVDFTTKQEPIESSLVELDDPAESYVRDLLVASGLYFGSWDKFIGNSVFEEVEESHRKLVKEDERSKKDDNKNKLEHKVLLDLLNEALSIVLGPPLTLSRFRRKLSNSSLQPPPCGKELLKLVWDIVRVSLYPTSNTSLYSVDSFLAQDLGSISWSGLTNDEIDTLERETACTIADDLVEEFTKDMLL 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00874 836 MobiDBLite consensus disorder prediction 176 190 - -
Vimu11g00874 836 MobiDBLite consensus disorder prediction 235 257 - -
Vimu11g00874 836 MobiDBLite consensus disorder prediction 161 190 - -
Vimu11g00874 836 MobiDBLite consensus disorder prediction 220 234 - -
Vimu11g00874 836 Pfam Domain of unknown function (DUF4378) 672 829 IPR025486 -
Vimu11g00874 836 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 835 - -
Vimu11g00874 836 MobiDBLite consensus disorder prediction 220 265 - -
Vimu11g00874 836 MobiDBLite consensus disorder prediction 161 175 - -
Vimu11g00874 836 Pfam DUF761-associated sequence motif 87 106 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00874 Vimu-Chr11 8989638 8994936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00874 74 834 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 36.420 4.72e-125 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00874 - - gmx:100810825 1249.57