Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00872 ATGCCGAAGGTTAAAGCTGATGCTAAAGCTGCCGATAACAGGTATCGCGTTGTTGATTGGTCCTTGTTGTTGAAGCGCAAGGGCGCTGGCGCTGGTAGGAAACAATCAAAGAAAGCTGCGAAGGATCCTAATAAGCCGAAAAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAACATCCAAACAACAAATCTGTTGCTGTTGTTGGCAAAGCTGGTGGTGACAAATGGAAATCTCTGTCTGACGCTGTGAGTTTTCTGAAGAAAATTTTGTTGATTGAAAAAGCACCCTTCATTGCTAGGGCTGAGAAGAAAAAGGAAGAGTATGAAAAGAGTATCTTGGCTTATAATAAGAAATTGGAAGGAAAAAATTCAGAGGAAGAAGAGTCTGACAAGTCAAAATCCGAAGTTAACGACGAGGAAGAAGATGAGGAGGATGATGAAGATGATGAGTGA 480 0.4208 MPKVKADAKAADNRYRVVDWSLLLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAVSFLKKILLIEKAPFIARAEKKKEEYEKSILAYNKKLEGKNSEEEESDKSKSEVNDEEEDEEDDEDDE 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00872 159 SUPERFAMILY HMG-box 37 129 IPR036910 -
Vimu11g00872 159 MobiDBLite consensus disorder prediction 141 159 - -
Vimu11g00872 159 Pfam HMG (high mobility group) box 46 125 IPR009071 -
Vimu11g00872 159 MobiDBLite consensus disorder prediction 125 159 - -
Vimu11g00872 159 CDD HMG-box_AtHMGB1-like 47 110 - -
Vimu11g00872 159 SMART hmgende2 45 126 IPR009071 -
Vimu11g00872 159 MobiDBLite consensus disorder prediction 27 50 - -
Vimu11g00872 159 Coils Coil 107 151 - -
Vimu11g00872 159 Gene3D High mobility group box domain 30 142 IPR036910 -
Vimu11g00872 159 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 46 125 IPR009071 -
Vimu11g00872 159 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 11 158 IPR031061 -
Vimu11g00872 159 MobiDBLite consensus disorder prediction 125 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00872 Vimu-Chr11 8970824 8971835 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vimu11g00872 HMG_box 5.5e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00872 K25507 - gmx:100305957 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00872 11 8970824 8971835 Vimu11g00872 11 8970824 8971835 ECH