Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00867 ATGTTCGTTCTCTCGCTTGGGTGTGGTGCGATGTCTGAGTTGATCAGTCTCTCGTTCGGAGTGGCGGGGTCGTCCACGACTTTCCCTCACTCTATGCTAGGTTCAACGAGTAACGTGGGCTTCTCCGCCACCACCAGCAGCTTCGGGAAGAGCCAATTCTCGGAGATTGCGAGTGGGAGCATCGACAGCGAAGGGTCTCTTCCGTTTTGTTCCCCTGACGGCCAGATTCTGGAACGGCCCAACCTGAAGGAGTTCAGTTTCGGGGACCTGAAAGCCGCAGCCAAGAGTTTCAAGGGCGACACATTGCTGGGTGAAGGTGGGTTTGGAAGAGTCTACAAGGGCTGGTTGGATGAGAAGAACCTTACCCCTGCCAAACCAGGCTCTGGCATGGTCGTCGCCATCAAAAAATTGAACCCCGAAAGCACCCAAGGCTTTCAAGAATGGAAGTCAGAAGTGAACTTTTTGGGAAGGCTTTCCCACCCTAACCTCGTTAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTGTACGAGTTCATGCCCAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAATACCCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGACTTGCATTCCTGCACTCGTCGGAAAAAGTTATATACAGAGATTTCAAGGCTTCAAATATACTCCTTGACAGCGTCAATTTTGGCTTGGCTAAATTGGGACCGTCCGGGGGACAGTCACATGTAACTACCAGGGTCATGGGCACCTATGGTTATGCTGCACCAGAATATATCGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGACACAAGAAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGACCAAGCCCTGTCTGACTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATAGAGGGTCAATATACACCCAAAGCTGCATTACAAGCAGCACAACTTACTCTAAAATGCCTAGAGCATGACCCTAAACAACGTCCTTCAATGAAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAACCATCCATGAAAAATCCAAGGAATCCAAAACCCGCAATTCCAACCACATTTCTCATCAGCCTCCCCGGCAGAGAGTTTCACTTGGTACAACAGGTTTTTTCCTAGTTTTTCTTCCTGGTTGGAAGAGGAGAAATTTTACATGGACGACCAATTACAGAGGTTTACGACTGCCAAACATGGGTCTCTCCTTCTCCTCTGCTCCCTCACTTCGTCAATCTTCACTCAACCGCCACCACTTTTCAGGCAATTTATCAAATTTTCCTTTCCTTTCTAAATTTATGCCAAACGTTCCCTTTTTCCTCGAATTCAAATTTTTCACGAGGGGTTCGGTTCCTCTGTTTTCAGGTTCATCAGACATTCACCGCAGCAACATGGAGTTCTCCGAAACCACCACAACCACCACGATCAGAAGGAGTCGGTTTTCCGTGAGAGAAAGCATCGGCAGCAACTGCTCTCCTCGTCCTCTTCCTTTTCCCGGTCGCCAAGTTCTGAAATGGCCTGAGTTGAAAGTGTTCAGTTTTAAGGAGCTGAAATCTGTCACAAGGAATTTCAGCTCCGACAGATTGCTCGGTGAAGGTACATTTGGCAGAGTTTACAAGGGATGGTTGGATAAGAACACCCTCACTCCCGCCAAACCAGGCTCTGGAGTGGTAGTTGCCATAAAAAAGTTAAACCGGGAGGGTTTTCGAGGGTTTCCAGAGTGGCAGTCAGAAGTGAGTTTTTTAGGAACGCTTTTCCACCCCAACCTCGTCAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTGCACGAGTTCATGCCCAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACGACTTTCTTGGAACACCCGGCTTAAAGTAGCAATTTGTGCTGCTCGTGGACTTGCATTCCTACACACGTCGGAAAAACAAGTTATACACAGAGATTTCAAAGCCTCAAATATACTCCTGGATAGTGTCAATTTTGGCTTGGCTAAATTGGGACCGTCCGGGGGACAGTCACATGTAACTACCAGGGTCATGGGCACCTATGGTTATGCTGCACCAGAATATATCGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGACAGAAGAAGGCCAATAGGGCAGCAGAACCTGGTTGAATGGACCAAGCCATGTCTCTCTTCGAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTACTCTAAAATGCCTAGAGAATGACCCTAACCAACGTCCTTCAATGAAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAGATATCCATTCAAGATAG 2538 0.4665 MFVLSLGCGAMSELISLSFGVAGSSTTFPHSMLGSTSNVGFSATTSSFGKSQFSEIASGSIDSEGSLPFCSPDGQILERPNLKEFSFGDLKAAAKSFKGDTLLGEGGFGRVYKGWLDEKNLTPAKPGSGMVVAIKKLNPESTQGFQEWKSEVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHSSEKVIYRDFKASNILLDSVNFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTRRPTGQQNLVEWTKPCLTSKKKLKTIMDGKIEGQYTPKAALQAAQLTLKCLEHDPKQRPSMKEVLEGLEAIETIHEKSKESKTRNSNHISHQPPRQRVSLGTTGFFLVFLPGWKRRNFTWTTNYRGLRLPNMGLSFSSAPSLRQSSLNRHHFSGNLSNFPFLSKFMPNVPFFLEFKFFTRGSVPLFSGSSDIHRSNMEFSETTTTTTIRRSRFSVRESIGSNCSPRPLPFPGRQVLKWPELKVFSFKELKSVTRNFSSDRLLGEGTFGRVYKGWLDKNTLTPAKPGSGVVVAIKKLNREGFRGFPEWQSEVSFLGTLFHPNLVKLLGYCWDEDELLLVHEFMPKGSLENHLFRRNPNIERLSWNTRLKVAICAARGLAFLHTSEKQVIHRDFKASNILLDSVNFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDRRRPIGQQNLVEWTKPCLSSKKKLKTIMDGKIEGQYSPKAALQAAQLTLKCLENDPNQRPSMKEVLEGLEAIEDIHSR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00867 845 SUPERFAMILY Protein kinase-like (PK-like) 77 370 IPR011009 -
Vimu11g00867 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Vimu11g00867 845 SUPERFAMILY Protein kinase-like (PK-like) 541 837 IPR011009 -
Vimu11g00867 845 CDD STKc_IRAK 103 375 - -
Vimu11g00867 845 ProSitePatterns Protein kinases ATP-binding region signature. 566 599 IPR017441 GO:0005524
Vimu11g00867 845 FunFam Receptor-like serine/threonine-protein kinase ALE2 183 391 - -
Vimu11g00867 845 Gene3D Phosphorylase Kinase; domain 1 544 645 - -
Vimu11g00867 845 Gene3D Phosphorylase Kinase; domain 1 81 182 - -
Vimu11g00867 845 FunFam Receptor-like serine/threonine-protein kinase ALE2 646 845 - -
Vimu11g00867 845 ProSiteProfiles Protein kinase domain profile. 560 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00867 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vimu11g00867 845 FunFam Serine/threonine-protein kinase BIK1 66 182 - -
Vimu11g00867 845 ProSiteProfiles Protein kinase domain profile. 97 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00867 845 PANTHER OS01G0588500 PROTEIN-RELATED 56 375 - -
Vimu11g00867 845 FunFam Serine/threonine-protein kinase BIK1 535 645 - -
Vimu11g00867 845 ProSitePatterns Protein kinases ATP-binding region signature. 103 136 IPR017441 GO:0005524
Vimu11g00867 845 MobiDBLite consensus disorder prediction 381 400 - -
Vimu11g00867 845 Pfam Protein tyrosine and serine/threonine kinase 563 835 IPR001245 GO:0004672|GO:0006468
Vimu11g00867 845 Pfam Protein tyrosine and serine/threonine kinase 101 371 IPR001245 GO:0004672|GO:0006468
Vimu11g00867 845 Gene3D Transferase(Phosphotransferase) domain 1 646 844 - -
Vimu11g00867 845 Gene3D Transferase(Phosphotransferase) domain 1 183 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00867 Vimu-Chr11 8908140 8919987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00867 476 836 Glycoside Hydrolase AT3G07070 42.391 7.70e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00867 PK_Tyr_Ser-Thr 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00867 - - gmx:100794193 643.269