Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00857 ATGTGGGGTTCGGTTCCTCTGTTTTCAGGTGCATCAGATATTCACGGCAGCAACTTCGAATTCTCCGAAACCACCACAGCCACCGAGATCAGAAAGAGTCAGTTTTCCGTGAGAGAAACCATCTACAGCGATTGCTCTCCTCTTCCTTTTACCCATGGCCAAATTCTGAAATGGCCTGAATTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCGACAGATTAGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGCATGGTTGGATGAGAACACCCTCACCCCCGCCTCACCAGGCTCTGGTGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAGGTACTCAAGGGTTTGCACAGTGGCAGTCTGAGGTAAACTTTTTAGGAAGGCTTTCTCACCCCAACGTGATCAGGCTATTGGGGTACTGTTGGGACGAGGATCAGTTTCTTATTGTATATGAGTTCATGTCAAAGGGAAGCTTATGGGGGCATCTCTTCGAAACAAATTATAGCATGGAGCCGCTTTCTTGGAACATCCGGCTTAAAATAGCTAAGGGTGCAGCTCGGGGATTAGCTTTCTTACACGCCACCGAAAATAAAGTCATATTCAGAGATTTCAAGACCTCAAATATACTTCTCGACGAGAATTATGATGCAAAAATATCAGATTTTGGCATAGCTAAATTGGGACTATCTGAGGGACAATCACATGAAACTACCATGATCGTGGGCACCTTTGGTTATGCTGCTCCAGAATATATGCTTACAGGAGACTTGTATGTGAAGAGTGATGTGTATGCATTTGGTGTGGTGCTTCTTGAAATGCTCACAGGCATGAGGGTAATTGACGTAAGAAGGCCAACAGGGCAGGAGAACCTGGTTGAATGGACAAAACCTTGTCTCTCTTCAGGAAAGAAGTTGAAAAGCATTATGGATGGTAGTATAAAGGATCAAATTTCACCCAAGGCTGCATTAGAATCAGCACAACTTATTCTGGAATGCCTAGAGCATGACCCTAAACAACGTCCTTCAATGGAAGAAGTACTTAAGAGATTGGACGTCATTGACGATATCCCATTCAAGGAAGTCAACTTAGTTTAG 1119 0.4424 MWGSVPLFSGASDIHGSNFEFSETTTATEIRKSQFSVRETIYSDCSPLPFTHGQILKWPELKVFSFEELKSATGNFKSDRLVGEGGFGRVYKAWLDENTLTPASPGSGVEVAIKMFNPEGTQGFAQWQSEVNFLGRLSHPNVIRLLGYCWDEDQFLIVYEFMSKGSLWGHLFETNYSMEPLSWNIRLKIAKGAARGLAFLHATENKVIFRDFKTSNILLDENYDAKISDFGIAKLGLSEGQSHETTMIVGTFGYAAPEYMLTGDLYVKSDVYAFGVVLLEMLTGMRVIDVRRPTGQENLVEWTKPCLSSGKKLKSIMDGSIKDQISPKAALESAQLILECLEHDPKQRPSMEEVLKRLDVIDDIPFKEVNLV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00857 372 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Vimu11g00857 372 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Vimu11g00857 372 Pfam Protein kinase domain 77 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00857 372 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Vimu11g00857 372 PANTHER OS01G0588500 PROTEIN-RELATED 37 359 - -
Vimu11g00857 372 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 162 364 - -
Vimu11g00857 372 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00857 372 Gene3D Phosphorylase Kinase; domain 1 60 161 - -
Vimu11g00857 372 FunFam Serine/threonine-protein kinase BIK1 46 161 - -
Vimu11g00857 372 CDD STKc_IRAK 82 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00857 Vimu-Chr11 8832532 8834637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00857 62 365 Glycoside Hydrolase AT3G07070 43.934 9.71e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00857 Pkinase 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00857 - - vum:124825635 610.142