Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00856 ATGATGGGTTCGGTTCCTCTGTTTTCAGGCTCATCAGACATTCACGGCAGCAGCGTCGAGTTCTCCGAAACCACCGCAACCATCTACAGTGATTGCTCTCCTATTCCTTTTACCCATGGCCAAATTCCGAAATGGCCCGAGTTGAAGGTCTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCAACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTTGCAAGGGTTTGCACAGTGGCAGTCTGAGGTAAATGTTTTAGGAAAGCTTTCTCATCCCAACGTGATCAGGTTATTGGGGTACTGTTGGGACGAGGATCAGTTTCTTCTTGTGTATGAGTTCATGCCAAACAGAAGCCTCCACTATCATCTCTTCGGAACAAATCATAGCATGGAGCCACTTTCTTGGAACACCCGGCTTAAAATAATTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAATGTCATATTGAGAGATTTCAAGAGCTCAAATATACTGCTCGACGGGAATTACAATGCAAAAATATCAGACTTTGGGTTGGCTAAATTGGGACCATCTGAGGGACAATCACATGTAAGTACGGAGATCGTGGGCACCTATGGTTATGCTGCACCAGAATATTTCCTAACAAGGCAGGTGAATGTGAAGAGCGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGATAAAAGAATCCCAGGGCAGCGGAATCTGGTTGGATGGACCAAGGACTGTCTCTCTTCCGAAAAAATGTTGAAAGCAATTATGGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTTCATTACTAGCAGCACAACTTGCTCTTAAATGTCTAGAGGATGATCCTACTCAACGTCCTTCAATGGAAGAAGTTCTTGGGGGATTGGAAGCCATTGAAGATAACCATTGA 1056 0.4498 MMGSVPLFSGSSDIHGSSVEFSETTATIYSDCSPIPFTHGQIPKWPELKVFSFEELKSATGNFKSNRLVGEGGFGRVYKGWLDENTLTPAKPGSGVEVAIKMFNPESLQGFAQWQSEVNVLGKLSHPNVIRLLGYCWDEDQFLLVYEFMPNRSLHYHLFGTNHSMEPLSWNTRLKIIIGAARGLAFLHANENNVILRDFKSSNILLDGNYNAKISDFGLAKLGPSEGQSHVSTEIVGTYGYAAPEYFLTRQVNVKSDVYGFGVVLLEILTGMRALDKRIPGQRNLVGWTKDCLSSEKMLKAIMDGKIEGQYSPKASLLAAQLALKCLEDDPTQRPSMEEVLGGLEAIEDNH 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00856 351 Gene3D Transferase(Phosphotransferase) domain 1 149 351 - -
Vimu11g00856 351 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 149 351 - -
Vimu11g00856 351 Pfam Protein tyrosine and serine/threonine kinase 65 341 IPR001245 GO:0004672|GO:0006468
Vimu11g00856 351 SUPERFAMILY Protein kinase-like (PK-like) 39 342 IPR011009 -
Vimu11g00856 351 Gene3D Phosphorylase Kinase; domain 1 47 148 - -
Vimu11g00856 351 FunFam Serine/threonine-protein kinase BIK1 33 148 - -
Vimu11g00856 351 PANTHER OS01G0588500 PROTEIN-RELATED 42 347 - -
Vimu11g00856 351 ProSiteProfiles Protein kinase domain profile. 63 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00856 351 ProSitePatterns Protein kinases ATP-binding region signature. 69 101 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00856 Vimu-Chr11 8828098 8830014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00856 49 344 Glycoside Hydrolase AT3G07070 46.644 7.86e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00856 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00856 - - vum:124825635 569.311