Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00855 ATGAAGAAAAGAAGGCCGGACGGTTGCCTTGAAGACTGGACGAACTCGTTGAAGGTCGGACGATCACCTAGAGGTCATCCCTGGGGAGACCGTACGACCTTCAACGGGTTCGTCCAGTTATTAAGGCAACCGTCCAGCCTCCAACGAATTCGTCCATCCTTTAAGGCCCATCTGGTCTTCGAGATAACTTGGAATTTTTTAAGGGACCTCCAAACCACCCTGAAACATTTTGGCGTCCACCCCACAAGGAACCATTCAGTGGTGCCTCAAAAGAACGTCAACTCAACCTTTCGCCCTCCACCCCTCGGCCTCGCCTATTTAGCCACTCGACCTTTTCTGTTCAGCCACTCTGCCTCGTTTGCTCGACCGTTCGACCTCAACTTCTTATGCTCGGCCATCCGGCCTTCACCACTCGATCATCCAGCCTCCACTGTTCGGCCATTCAGCCTCTACCACTCAACAATTCGGCCTTTAGCCAAAGGTGGTGAACCTGGGTGTCAAGAAAAAGCGTCCTGGTGTAGTCTAGGCAATCCAAGAAAGGAGAGTTTTGCAATGGTTGATCTTTCAACATTGCACTATCCGATACTCACAGACAACAATTGGAGTCGGTGGAGTGCCCAAATGCGGGTGGTATTCCACGTACAGAAGGTTAGCAATGTTGTTGAAGGTGATTTGTCGGTTGAGTCTTTTGGCAAAGAGGAGCAAAAGAAAGATTGGAAGGAAAAAGACGACAGAGCACTGTTAATAATACACCAATGTGTTGACGATACAAACTTTGAAAAGATTCAGAACGCTATGTCAACGAAGGAAGCTTGGAACATCCTCGTTGGTCGTCATTCTGGAGGAGCAAAGGTCAAGAAGCACATGGAGATGGAAGACAGTGATAAGGTGAGCGAGTTTTTCAGTCGTGTGATAAATGTGGCAAACCAGATGAAATCTTGCGGGGATAAGATTACAGACGCAATGATAATGGAAAAGATCTTGAGATCAATGCCTGCTGCATTTGATCATATCGTTGTAACCATTGAAGAAACCAGAGATATGGAAAAACTTAAATTGAAGAACTGCAAAGCGCGTTTAAAGCATATGAAATGCGAAGAAATGGACGAAAGAAACATCCAACATATTTCTAGTGACGGAAAGAAGAAAACGAGCAAATGGAAAGGCAAGAGCAAAGATGCGAAAAAATGGAAGAAAGATACAGATGACCAAGAAGAGAAAGGTAGTTCTGTAGATAAGAAAAACATCCCGAGAAAACAATATTCGAAAGAAGAGAAAAAGAATATGGAATGCTTCGTGTGTCGTAAGAAAGGCCTTTTATCGTATGAGTGTTGGTTCAACAAGAATGCCCAGAACAAGAAAGGCCATAACAGAGAAGCTCACGTGGTAGAAGAAGAGGAATCTGAGTCTGAACCTTTGATTCTTATGGTCGCTACCAACACAGAAGACACTGGAACAACACAAAATATATGGTATGTAGATTCGGGTTGTTCCCATCACATGACATACAATAGAAGCTGGTTGTGGAACCTTGATGAAACCAAGAAGAGCAAAGTCGAAGGAATTGGAAGTGTGAAGATTAAAAGTAGAAATGGGTTGCACGCAACATTGGAGAATGTTCTTCTTGTTCCAGAAATGAAATGCAACCTCTTAAGCGTGGGACAACTGAATGAAAATGGATACACCGTCATCATAGGAAGCAACGCTCAGATGGAGGTATATGACCAAGGAGCATCAGACATTCACGGCAGAAACGTCGAGTTCACCGAAACCACCACAACCACCGAGATCAGAAAGAGTCAGTTTTCCGTGAGAGAAACCATCTACAGCGATTTCTCTCCTCTTCCTTTTCCCGATGGGCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACACGGAATTTTAGGACCAACAGATTGATCGGTGAAGAACACCCTCACCCCGCCAACCCAGGCTCTGGAATTGAAGTTGCGATACAAAAGATCAACGATCAAGGGTTTTCAGAGTGGCAGTCTGAGGTAAACTTTTTAGGAAGACTTTCTCACCCCAACGTGATCAGGTTATTGGGGTACTGTTGGGACGAGGATAAGTTTCTTCTTGTGTATGAGTTCATGCCAAACGGAAGCCTCGAGTGTCATCTCTTCAAAACAGGAAACATGGAGCCACTTTCTTGGAATACCCGGCTTAAAATTGCTAAGGGTGCAGCTCGGGGATTAGCGTTCTTGCACGCCACCGAAAATAAAATCATATTCAGAGATTTCAAGACCTCAAATATACTTCTCGACGAGAATTACGATGCAAAAATATCAGATTTTTGCATAGCTAAATTGGGACCATCTGAGGGACAATCACATGTAACTACCAGTATCATGGGCACCTATGATTATGCTGCACCAGAACATATCGCAACAGGAGACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGAGGGCATTTGACCCAAGAAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGACCAAGCCATGTCTTTCTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATAGAGGGTCAATATTCACTCAAAGCTGCATTACAAGCAGCACAACTTGCTCTAAAATGCCTAGAGCATGACCCTAAACAACGACCTTCAATGAAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAACCCTCCATGAAAAATCCAAAGAATTCAAAACCCGCTATTCTAACCACATTTCTTATCAGCATCCCCGGCATAGAGTTGTGAGGTTGTTCTCTGTGTTTGAATTTTTTGAAGGCGTCGAAGTGGCGAGCAATCTGTGTGGACTTGGACATTACGCTTGGTTGGTGGTTGGGTGCCTATTTCGTGGAAGTTGTTACCTTTTTTATGCCATGGCTTTCGTCAAGTCAGTACCAACCACACACTGGGGAGCCCCTCTACCAGAGTCAGGGAGCAGCGTTGGACTTTTGGTACAGAGGCACTGTAATCGCTTACACAGGGACATAAGTGACAAAGTCCCTCTTCCTCACACATGCACTTGGATAAAACACTCTTACAAACTCCTAACCATAGTGCTGGTGGACAACGTCAGTCGCATTGGGAAGGACGAGGAGGATCTGGACCCGCGGGTGGGGCGCGAATGCGTGGGAGAGCCTGAGAAGTTGGGATCGATGGAATCTAGGGTTCTACGGAGGAGATTGAAACTGAAAAGGGGTTTATAG 3273 0.4494 MKKRRPDGCLEDWTNSLKVGRSPRGHPWGDRTTFNGFVQLLRQPSSLQRIRPSFKAHLVFEITWNFLRDLQTTLKHFGVHPTRNHSVVPQKNVNSTFRPPPLGLAYLATRPFLFSHSASFARPFDLNFLCSAIRPSPLDHPASTVRPFSLYHSTIRPLAKGGEPGCQEKASWCSLGNPRKESFAMVDLSTLHYPILTDNNWSRWSAQMRVVFHVQKVSNVVEGDLSVESFGKEEQKKDWKEKDDRALLIIHQCVDDTNFEKIQNAMSTKEAWNILVGRHSGGAKVKKHMEMEDSDKVSEFFSRVINVANQMKSCGDKITDAMIMEKILRSMPAAFDHIVVTIEETRDMEKLKLKNCKARLKHMKCEEMDERNIQHISSDGKKKTSKWKGKSKDAKKWKKDTDDQEEKGSSVDKKNIPRKQYSKEEKKNMECFVCRKKGLLSYECWFNKNAQNKKGHNREAHVVEEEESESEPLILMVATNTEDTGTTQNIWYVDSGCSHHMTYNRSWLWNLDETKKSKVEGIGSVKIKSRNGLHATLENVLLVPEMKCNLLSVGQLNENGYTVIIGSNAQMEVYDQGASDIHGRNVEFTETTTTTEIRKSQFSVRETIYSDFSPLPFPDGQILKWPELKVFSFEELKSATRNFRTNRLIGEEHPHPANPGSGIEVAIQKINDQGFSEWQSEVNFLGRLSHPNVIRLLGYCWDEDKFLLVYEFMPNGSLECHLFKTGNMEPLSWNTRLKIAKGAARGLAFLHATENKIIFRDFKTSNILLDENYDAKISDFCIAKLGPSEGQSHVTTSIMGTYDYAAPEHIATGDLYVKSDVYGFGVVLLEILTGMRAFDPRRPTGQQNLVEWTKPCLSSKKKLKTIMDGKIEGQYSLKAALQAAQLALKCLEHDPKQRPSMKEVLEGLEAIETLHEKSKEFKTRYSNHISYQHPRHRVVRLFSVFEFFEGVEVASNLCGLGHYAWLVVGCLFRGSCYLFYAMAFVKSVPTTHWGAPLPESGSSVGLLVQRHCNRLHRDISDKVPLPHTCTWIKHSYKLLTIVLVDNVSRIGKDEEDLDPRVGRECVGEPEKLGSMESRVLRRRLKLKRGL 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00855 1090 MobiDBLite consensus disorder prediction 376 420 - -
Vimu11g00855 1090 Gene3D Transferase(Phosphotransferase) domain 1 713 933 - -
Vimu11g00855 1090 ProSiteProfiles Protein kinase domain profile. 643 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00855 1090 PANTHER OS01G0588500 PROTEIN-RELATED 529 912 - -
Vimu11g00855 1090 Pfam gag-polypeptide of LTR copia-type 239 362 - -
Vimu11g00855 1090 MobiDBLite consensus disorder prediction 394 420 - -
Vimu11g00855 1090 SUPERFAMILY Protein kinase-like (PK-like) 625 909 IPR011009 -
Vimu11g00855 1090 Pfam Protein kinase domain 665 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00855 1090 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 713 922 - -
Vimu11g00855 1090 Gene3D Phosphorylase Kinase; domain 1 621 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00855 Vimu-Chr11 8811277 8822293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00855 629 918 Glycoside Hydrolase AT3G07070 44.482 1.27e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00855 Pkinase 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00855 - - vum:124825635 523.472