Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00854 ATGGGTATCTGTTTCTCGGGTGCTCCATCACTTCATTCCTCTTCACTCAGCCGTGCATCAGACATTCACGGCAGCAACGTCGAGTTCTCCGAAACCACCGCAACCATCTACAGTTGGTTGGTTGGAAGATACAGACTGCGGTTATTGGGATACTGTTGGGACGAGGATGAGTTTCTTCTTGTGTATGAGTTCATGCCAAACGGAAGCCTCGAGTGCGATCTCTTCAAAACAGGAAATGATAGCACGGAGCCACTTTCTTGGAACACCCGGCTTAAAATAGCTAAGGGTGCAGCTCGGGGATTAGCTTTCTTGCACCCCAACGAAAATAAAGTCATATTCAGAGATTTCAATACCTCAAATATACTTCTCGACGAGGTCAGTTAG 384 0.4688 MGICFSGAPSLHSSSLSRASDIHGSNVEFSETTATIYSWLVGRYRLRLLGYCWDEDEFLLVYEFMPNGSLECDLFKTGNDSTEPLSWNTRLKIAKGAARGLAFLHPNENKVIFRDFNTSNILLDEVS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00854 127 SUPERFAMILY Protein kinase-like (PK-like) 46 125 IPR011009 -
Vimu11g00854 127 Gene3D Transferase(Phosphotransferase) domain 1 13 126 - -
Vimu11g00854 127 Pfam Protein tyrosine and serine/threonine kinase 46 125 IPR001245 GO:0004672|GO:0006468
Vimu11g00854 127 ProSiteProfiles Protein kinase domain profile. 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00854 127 PANTHER OS01G0588500 PROTEIN-RELATED 46 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00854 Vimu-Chr11 8808257 8808899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00854 31 125 Receptor kinase-like Gene Family AT5G39000 46.875 4.34e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00854 PK_Tyr_Ser-Thr 3.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00854 - - vum:124825635 142.124