Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00852 ATGGGTCTCTCCTTCTCTAGTGCTCCATCACTCCATTCCTTTTTTTTTGCAGGTGCATCAGACATTCACAGCAGCAACGTCGAATTCTCCGAAACCACCACAACCACCGAGATCGGAAGAGTCAGTTTTTGGGATGAACAGCTTCAAATTAAAGTGCTGGCAATCCAAGACCAGAACCAGAGGTTTCTGATCGGCATAAGATGGGAATCTGCTTCTCCTGTGCTCCATCACTTCATTCCTCTTCACTCAACCGTCCTCACTATTCGGGCAAGTTATCAAAATTTCTGTGCCCTTTCTAAATTCATCCCAAAACAGGAAATGGTTTCTTCCTTCTTTTCCTCCCATTCGAATTTTCCCATGACGGCTTCGGTTCCTCTGTTTTCAGGTTCACCAGACATTCACGGCAGCAACGTCGAGTTCTCCGCAACCACCACCACCACCGAGATCGGAAAGAGTCAGTTTTCCGTGATAGAAACCATCTACAGCGATTACTCTCCTCTTCCTTTTGCCGATGGCCAAATTCTGAAAAGGCCCGAGTTGAAGGTCTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCGATAGATTGATCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACATCCTCACCCCCGCCAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAGCCCGGAAGGTTTTCAAGGGTTTGCACAGTGGCAGTCTGAGGTAAACGTTTTAGGAAGGCTTTCTCACCCAAACGTGATCAGGTTATTGGGATACTGTTGGGACGAGGATGAGTTTCTTCTTGTGTACGAGTTCATGCCAAATAGAAGCCTCGACTGTCATCTCTTCAAAAGAAATCATGGCATGGAACCTCTTTCTTGGAATACCCGGCTTAAAATAGTTATTGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAACCTCATATTCAGAGATTTCAAGAGCTCAAATATACTGCTGGACGGGAATTACAATGCAAAATTAACAGACTTTGGATTCGCTAAATTGGGACCATCTGAGGGACAATCACATGTAACTACCGAGGACATGGGCACCGATGGTTATGCTGCACCAGAATATATGGCAACAGATTTTGGCTTGACTAAATTGGAACCGTCTGAGGGACAGTCATATGTAAGTACCAGGATCTTTGGCACCTATGGTTATGCTGCACCAGAATATGTCGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGAGTAGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGACAAAAGAAGGCCAAAAGGGCAGCATAAGCTGGTTGAATGGAGCAAGCCCTGTCTCTCTTCCGAAAAAAAGTTGAAAACAATTATGGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTACTCTAAAATGTCTAGAGCTTGACCCTAAACGACGTCCTTCAATGAAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAAATATCCATTGA 1557 0.4477 MGLSFSSAPSLHSFFFAGASDIHSSNVEFSETTTTTEIGRVSFWDEQLQIKVLAIQDQNQRFLIGIRWESASPVLHHFIPLHSTVLTIRASYQNFCALSKFIPKQEMVSSFFSSHSNFPMTASVPLFSGSPDIHGSNVEFSATTTTTEIGKSQFSVIETIYSDYSPLPFADGQILKRPELKVFSFEELKSATGNFKSDRLIGEGGFGRVYKGWLDENILTPAKPGSGVEVAIKMFSPEGFQGFAQWQSEVNVLGRLSHPNVIRLLGYCWDEDEFLLVYEFMPNRSLDCHLFKRNHGMEPLSWNTRLKIVIGAARGLAFLHANENNLIFRDFKSSNILLDGNYNAKLTDFGFAKLGPSEGQSHVTTEDMGTDGYAAPEYMATDFGLTKLEPSEGQSYVSTRIFGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEILTGMRALDKRRPKGQHKLVEWSKPCLSSEKKLKTIMDGKIEGQYSPKAALQAAQLTLKCLELDPKRRPSMKEVLEGLEAIENIH 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00852 518 CDD STKc_IRAK 201 514 - -
Vimu11g00852 518 FunFam Serine/threonine-protein kinase BIK1 166 280 - -
Vimu11g00852 518 Pfam Protein kinase domain 196 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00852 518 Pfam Protein kinase domain 381 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00852 518 SUPERFAMILY Protein kinase-like (PK-like) 381 509 IPR011009 -
Vimu11g00852 518 PANTHER OS01G0588500 PROTEIN-RELATED 141 381 - -
Vimu11g00852 518 FunFam Os07g0541700 protein 281 370 - -
Vimu11g00852 518 SUPERFAMILY Protein kinase-like (PK-like) 173 379 IPR011009 -
Vimu11g00852 518 ProSiteProfiles Protein kinase domain profile. 195 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00852 518 Gene3D Transferase(Phosphotransferase) domain 1 381 518 - -
Vimu11g00852 518 Gene3D Phosphorylase Kinase; domain 1 169 280 - -
Vimu11g00852 518 Gene3D Transferase(Phosphotransferase) domain 1 281 380 - -
Vimu11g00852 518 ProSitePatterns Protein kinases ATP-binding region signature. 201 233 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00852 Vimu-Chr11 8791023 8795230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00852 171 511 Glycoside Hydrolase AT3G07070 40.643 1.82e-80 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00852 Pkinase 3.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00852 - - vum:124825635 644.425