Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00850 ATGGGTCTATGCTTCTCCAGAAATGGTTCGTTCCTTTTTTATTCCTCCGATTCTAATTTTCCCATGATGGGTTCGGTTCCTCTGTTTTCAGGCTCATCAGACATTCACGGCAGCAGCGTCGAGTTCTCCAAAACCATCTACAGTGATTGCTCTCCTATTCCTTTTACCCATGGCCAAATTCCGAAATGGCCCGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCAACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCAACCCCGCCAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAAACCGGGAGGTACTCAAGGGTTTGCAGAGTGGCAGCTCTCTGATTATCGAAAACTTTTTTCTGTTAATTTGAAAATGCAGTCAGAAGTGAACTTTTTGGGAAGGCTTTCCCACCCCAACCTCGTCAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTGTACGAGTTCATGCCCAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGACTTGTATTCCTGCACACGTCGGAAAATCAAGTTATATACAGAGATTTCAAGGTCTCGAATATACTCCTTGATGGTGTCAATTTTGGCATTGCTAAATTGGGACCGTCTGAGGGAGAATCACATGTAAGTACCAGTGTCATGGGCACCTATGGTTATGCTGCACCAGAATATGTCGCAACAGGAGACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGAGGGTATTTGACCCAGGAAGGCCAACATGGCAGCACAACCTGGTTGCATGGATAAAACCTTATCTGTCTTACAAAAAGAAGTTGAAAAACATTATGGATGGTAATATAAAAGGTCAAATTTCACGAAAGGCTGCATTAAAATCAGCACAACTCATTCTGAAATGCCTATACTATGACCCTGAACAACGACCTTCAATGGAAGAAGTACTTGAGGGATTGGAAGCCGTTGAAACAAGAAAGCCAGCTTAA 1146 0.4372 MGLCFSRNGSFLFYSSDSNFPMMGSVPLFSGSSDIHGSSVEFSKTIYSDCSPIPFTHGQIPKWPELKVFSFEELKSATGNFKSNRLVGEGGFGRVYKGWLDENTLNPAKPGSGVEVAIKMFKPGGTQGFAEWQLSDYRKLFSVNLKMQSEVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLVFLHTSENQVIYRDFKVSNILLDGVNFGIAKLGPSEGESHVSTSVMGTYGYAAPEYVATGDLYVKSDVYGFGVVLLEILTGMRVFDPGRPTWQHNLVAWIKPYLSYKKKLKNIMDGNIKGQISRKAALKSAQLILKCLYYDPEQRPSMEEVLEGLEAVETRKPA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00850 381 PANTHER OS01G0588500 PROTEIN-RELATED 60 375 - -
Vimu11g00850 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vimu11g00850 381 Pfam Protein tyrosine and serine/threonine kinase 83 371 IPR001245 GO:0004672|GO:0006468
Vimu11g00850 381 FunFam Serine/threonine-protein kinase BIK1 51 181 - -
Vimu11g00850 381 SUPERFAMILY Protein kinase-like (PK-like) 64 370 IPR011009 -
Vimu11g00850 381 ProSiteProfiles Protein kinase domain profile. 81 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00850 381 Gene3D Phosphorylase Kinase; domain 1 55 181 - -
Vimu11g00850 381 ProSitePatterns Protein kinases ATP-binding region signature. 87 119 IPR017441 GO:0005524
Vimu11g00850 381 Gene3D Transferase(Phosphotransferase) domain 1 182 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00850 Vimu-Chr11 8759807 8762429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00850 67 372 Glycoside Hydrolase AT3G07070 45.367 1.99e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00850 PK_Tyr_Ser-Thr 5.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00850 - - vum:124825635 543.502