Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00845 ATGTTTCATTCCCAACGCTTCAAACTCGTTCTTCTCTATCGGAAGTCACTCTCAAGAACCCCTCTTCAAACCCGACAACCCAACAATCCATTACCCTCGATACTCTCTCTGAAACACTTTTCAAATGCTTCACAGCAACACTCTTTCATGGTTTCCTACCTCGTAAACGACCGCGGGTTCTCCCCAAAAACCGTTCTGAAGGCTTCCAAATTCATTCAACTTGAGACCTCCGAAAAGCCCGACTCAGTCATCGCATTCTTCAGAGACAACGGATTCAGCAATACCCAAATAAACAGCATCGTCGGAAGAGCACCCAAGGTTCTCACTTGCGACCCCCACAAAAGGGTTTTTCCAAAGTTCGAGTTTTTACTCTCCAAAGGGGCCTCATGCTCTGACATTGTAGGAATGTTAGGGACATTGTTCTTCAGGATTGCTGGGGTGGAAATGTCAATGATGATGGAGAAAGCAGAGTCTGGACAGAAGCTATACACGCGAATGCGGCTTTGGGAATTTCCGCATCAGTATGTGATAGAACCAACAGATGGATCTTCTTCTGGTTCTTATCTGTCAGTTAGTCGAAAAGATGGCTCCATCAAGCTCATTGATGAGATTTCTGAAAGCAGCACCCTTCGAGTTCCTAAGATTTTCACAATTTATGGGGTGGCTGGGATGTTGCGGCTTTTGGAGGGATCGTATTTGCTGGCTATAACTGGGCGTGAATGTGTTGGATCCTACTTGGGACATCCAATTTTCAAAGTTTCATCTCTAAAGGTTTTTCCATGTGATTGCTCCCAACGCAATATCCCTTCTGAACAACAGAAGAAGACAGAGATCGATTTTTCTGGGATATTAAGAGTTGCTGAGAAGACTACGGGTCTGTTCTTCTCGTACGACGCCAATTTAACTCTCAGTACCCAAAGGCTAAATGACCTTGGTGACGAGTCTAGGTCGCTTCCCCTTTGGAGACAGGCAGAGCCTCGATTTCTATGGAATAATTATCTGTTGGAAGTGCTCATAGAGAACAAGCTTGACCCATACTTACTCCCTATCGTCCAAGGCAGTATCCTTTTCCCATCGTTATATATGATTATCCTTAACAAATCATTAGGTTTTCATCACTTTGAATCTGCTATCGGGAAAGATATTATTGAAATCACGTTAATCGCTAGGAGATGCACGAGAAGAAATGTAATGAATGATGAAGTTCAAATTCATGTTATCTTGCCCAAGTGTGAGTTTGATGACAGAAATATGTATGTATTTTTTCCCATATTTCATGAGAGTAAACTGGACCAAGAACACGATCAAGCATTGAACTCGATAATGACGATTGAAGCCATGCAAGAAGAAATTGCTCTTGCTTTTCCCAAGCCAGGAACCCGAATGTGGAGAAGAGGAGCTGATCCTGATGGATATGTGGCTAATTTTGTGGAAACAGAGCAAATTATGAAGATCAATGGGTATACAGGATCAATTGTTCAGGTTCGTGGTTCAATTCCGCTGCCTTGGCAGCAAATTGTTGACTTAACATATAAACCGAAGTATGAATTACTGAACCATGAGGAAGCTCCCCGAGTTTTGGAGAGGCATTTCTTAGATTTAAGAAAAAAGTATGGGTCTGTGTTAGCTATTGACCTAGTTAACGAGCACGGAGGAGAAGGTCGGCTATGCGAAAAATATGGAAAGACAATGCAACATGTATCTGGTAATGATGTCAGATATCTGCATTTCGATTTCCATCACGTTTGCGGGCACATCCATTTTGATCGTCTTTCAATCCTTTATGATCAAATATCTGATTTTATTGAGAGAAATGGATACCTTCTATTGAATGAAAAGGGAGAGAAAATGAAGGAGCAACTTGGGGTTGTGAGAACCAATTGTATTGATTGTCTAGACCGTACAAATGTTACTCAGAGCATGATAGGCCGAAATATGCTAGAATTCCAGCTTAGAAGAATTGGGATCTTTGGTGCCGAGGAAACCATTAGTTCACATCCAAATCTAGATGACAGCTATAAGATCTTGTGGGCTAATCATGGGGATGATATAAGTACTCAATATACAGGCACCCCTGCTCTCAAAGGAGACTTTGTCCGATTTGGGCATCGCACAATGCAGGGGATAGTAAATGATGGTGTGAATGCTCTTATGCGCTACTATTTGAATAACTTCTGTGATGGAACAAAGCAGGATGCAATTGATCTCTTACAAGGGCATTTCATAGTTTCTGCCAACCGAGAACATAGTCCTTCTCAGAATCAAGGCATTGAAGCTATTGCTTCATTTCCTCTGGCTTTGGGTCTGGTTTTGACTGGCTTTTTTTTCACACTCATGTCGTTGACGCAAGTCAGATATGATTTTAAGCACTTGTTCTTCTCACTTGTTTGGGCAAGCATTAGTGTTGGTATAGCAGCATTTGTGAAGGCCAATGGTCGCGTTTTCTGCAACAGACCTCGCCTACACAAACCCCGGTGTTGA 2481 0.4228 MFHSQRFKLVLLYRKSLSRTPLQTRQPNNPLPSILSLKHFSNASQQHSFMVSYLVNDRGFSPKTVLKASKFIQLETSEKPDSVIAFFRDNGFSNTQINSIVGRAPKVLTCDPHKRVFPKFEFLLSKGASCSDIVGMLGTLFFRIAGVEMSMMMEKAESGQKLYTRMRLWEFPHQYVIEPTDGSSSGSYLSVSRKDGSIKLIDEISESSTLRVPKIFTIYGVAGMLRLLEGSYLLAITGRECVGSYLGHPIFKVSSLKVFPCDCSQRNIPSEQQKKTEIDFSGILRVAEKTTGLFFSYDANLTLSTQRLNDLGDESRSLPLWRQAEPRFLWNNYLLEVLIENKLDPYLLPIVQGSILFPSLYMIILNKSLGFHHFESAIGKDIIEITLIARRCTRRNVMNDEVQIHVILPKCEFDDRNMYVFFPIFHESKLDQEHDQALNSIMTIEAMQEEIALAFPKPGTRMWRRGADPDGYVANFVETEQIMKINGYTGSIVQVRGSIPLPWQQIVDLTYKPKYELLNHEEAPRVLERHFLDLRKKYGSVLAIDLVNEHGGEGRLCEKYGKTMQHVSGNDVRYLHFDFHHVCGHIHFDRLSILYDQISDFIERNGYLLLNEKGEKMKEQLGVVRTNCIDCLDRTNVTQSMIGRNMLEFQLRRIGIFGAEETISSHPNLDDSYKILWANHGDDISTQYTGTPALKGDFVRFGHRTMQGIVNDGVNALMRYYLNNFCDGTKQDAIDLLQGHFIVSANREHSPSQNQGIEAIASFPLALGLVLTGFFFTLMSLTQVRYDFKHLFFSLVWASISVGIAAFVKANGRVFCNRPRLHKPRC 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00845 826 ProSiteProfiles Sac phosphatase domain profile. 284 690 IPR002013 GO:0016791
Vimu11g00845 826 Gene3D Transcription termination factor 3, mitochondrial 40 140 IPR038538 -
Vimu11g00845 826 Pfam mTERF 85 137 IPR003690 GO:0003690|GO:0006355
Vimu11g00845 826 Pfam SacI homology domain 219 395 IPR002013 GO:0016791
Vimu11g00845 826 Pfam SacI homology domain 458 583 IPR002013 GO:0016791
Vimu11g00845 826 PANTHER PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 161 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00845 Vimu-Chr11 8706551 8724008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00845 153 825 Acyl Lipid Metabolism Gene Families AT3G51460 62.130 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu11g00845 Syja_N 8e-28 CL0031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00845 K21797 - jre:109007442 874.004