Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00839 ATGCAATTAGTGTTAATTAACATAGTATGTTTATTTTCTTTGTCAAGTTTTACCCATTTTCTTTATATAACTGCTTACTTTCTTCTAAATGCTAGGAATGAATCTGATCTTGTCGAGAAAATTGTGGAAGACATTTCAGTAAAATTGAGCAAGTTTTACCCAAGTGAATCAAATGGTCTTGTTGGAATTGATCAAAACGTTACACAGATTCAGTCGTTACTGCGGGTAGAATCAAATGAAGTTCTTTTTGTTGGAATTTGGGGCATGGGTGGCATAGGTAAGACAACCATTGCTCGTGCTATATTTGATAAATGTTCTCTTCAGTATGATGGCTGCTGTTTCTTCAATGTAAGAGAAGAACTGGAACGGCATGGATTCAGCAATTTACGAGAGAGGCTCATTTATGAACTACTTGAACGAGAAGGTCTCGATATAAACAAAGCAAGATTCTTCAGTTCTGCTCTAAGAATGCTGGGTCGGAAAAAAGTTATGGTAGTGCTTGATGATGTAAATACTTCTGAAGAATTAAGGTATCTGGTCACAAAACCAGTTTGCTTTGGTGCAGGGAGTAGAGTGATAATAACAAGCAGAGATCAGGACGTGCTTACAAGTGGAGGACTTGATCGAATTCATGAGGTCAAGGAAATGAAACCTCTTGATTCTCTGAAGCTCTTCTGTTTGATTGCCTTCAATGAAAGCCAACCCAAAATGGGATATGAAGAACTAACTGAAGAAGTGCTTAAAATCGCCCAGGGCAATCCCTTAGCCTTAAAAGTTTTAGGTGCAGAATTCCATTCCAGAAGTACTATAAACACATGGCAGTGTGCATTAAGCAAATTCAAGAAGTATCCCAATGAGAAAATTCAAAGTGTGTTACGATTCAGTTATGATGGACTGCATGAAGTAGAGAAAAAGGCCTTTCTAGACATTGCATTCTTTTTCCAAGAAGACACCAAAGCCTATGTTACAGAGCAACTGGATGCATGGGGACTTCATGGAGCCAGTGGAGTGGAGGTTCTCCAAAGGAAAGCTCTTATAACAGTTTCAAATGAGAATATAATACAAATGCATGACCTGATACGACAAATGGGTTGCGAAATAGTTCGTCAAGAATGTATTACACATCCAGGAAGACGCACCCGACTGAGGGATAAAGAGGAAGTATACAATGTATTGAGGTATAAGCTGGGAAGCGATAAGGTGGAGGGCATGCAAGTTGATGTGCTTCGAATTAAAGATTTGTCGCTGAAAGTAGGCACTTTTAAAAAGATGCCTTGTCTGAGATTTCTGAAATTTTATCTCCCCGATGATAATCTTTTCTTGCCGCCAAACCCGGATGGAAATTTATGGTATGGAGAATATCACTTTTCGTTGCTTTTATCTGCATGGTGCAAAGACCTCATGAGAGTTGCATGTGAGATTCAGATAAAATGTGTTGACTACCTTTATATTGATGGTTGCTCACATCCTTCCCAACTGAACAAATCTTCAGTAACATCAACGCTAGGAAGCCATGGAATGGTAACGCTATCGACGGCATTGATATCATTGAACGAACCAACTGGTTTCCTCAGGGATCTTGAATGCTCAGAGATGCTTGATCAACAATTTAAGATTCTGCCTGATGGGCTACTTTGCCTGAGATCTACTTATTATATTAAGCTTTCTAAGAAGAGCACGGGGCAAGACAGTGGAAAACCCAAATTGCACGTTCTGTTTGACAGCTTAAAGTTTTATGAACGAATATCTGTGAGCGAGTTGGAGAACTCATCAGATATCCGGGATAATAGGGTGTTCTTTCTTTATTTTGCAGGTTATAACTTTCTGTTGCATCTCTTTCTTAAGAGACCT 1851 0.3906 MQLVLINIVCLFSLSSFTHFLYITAYFLLNARNESDLVEKIVEDISVKLSKFYPSESNGLVGIDQNVTQIQSLLRVESNEVLFVGIWGMGGIGKTTIARAIFDKCSLQYDGCCFFNVREELERHGFSNLRERLIYELLEREGLDINKARFFSSALRMLGRKKVMVVLDDVNTSEELRYLVTKPVCFGAGSRVIITSRDQDVLTSGGLDRIHEVKEMKPLDSLKLFCLIAFNESQPKMGYEELTEEVLKIAQGNPLALKVLGAEFHSRSTINTWQCALSKFKKYPNEKIQSVLRFSYDGLHEVEKKAFLDIAFFFQEDTKAYVTEQLDAWGLHGASGVEVLQRKALITVSNENIIQMHDLIRQMGCEIVRQECITHPGRRTRLRDKEEVYNVLRYKLGSDKVEGMQVDVLRIKDLSLKVGTFKKMPCLRFLKFYLPDDNLFLPPNPDGNLWYGEYHFSLLLSAWCKDLMRVACEIQIKCVDYLYIDGCSHPSQLNKSSVTSTLGSHGMVTLSTALISLNEPTGFLRDLECSEMLDQQFKILPDGLLCLRSTYYIKLSKKSTGQDSGKPKLHVLFDSLKFYERISVSELENSSDIRDNRVFFLYFAGYNFLLHLFLKRP 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00839 617 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 460 IPR044974 GO:0006952
Vimu11g00839 617 Gene3D - 39 206 IPR027417 -
Vimu11g00839 617 Pfam NB-ARC domain 66 297 IPR002182 GO:0043531
Vimu11g00839 617 SUPERFAMILY "Winged helix" DNA-binding domain 287 389 IPR036390 -
Vimu11g00839 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 310 IPR027417 -
Vimu11g00839 617 PRINTS Disease resistance protein signature 83 98 - -
Vimu11g00839 617 PRINTS Disease resistance protein signature 157 171 - -
Vimu11g00839 617 PRINTS Disease resistance protein signature 250 264 - -
Vimu11g00839 617 Gene3D - 216 300 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00839 Vimu-Chr11 8677579 8679525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00839 27 433 WRKY Transcription Factor Family AT4G12020 35.351 1.05e-55 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00839 - - vum:124821432 915.22