Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00828 ATGACGGGTTCGGTTCCTCTGTTTTCAGGTTCATCAGACATTCGCAGAAAGAGTCAGTTTTCCGTGGGAGAAAGCTTCGAAAGAGAATGCTCTCCTCTTCCTTTTTCCGGTGGCCAAATTCTGAAATGGCCTGAGTTGAAGGTGTTCAGTTTTGAGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCACCCCCGCCAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAAGCCTGAAAGTAAGCAAGGGTTTGCACAGTGGCAGTCTGAGGTGAATTTTTTAGGAAGGCTTTCTCACCCCAACGTGATCAAGTTATTGGGGTACTGTTGGGACGAGGATCAGTTTCTTCTTGTGTATGAGTTCATGCCAAATAGAAGCCTCGACTATCATCTCTTCGAAACAGGAAATCACGAACCACTTTCGTGGAACACCCGGCTTAAAATAATTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGATCATATTAAGAGATTTCAAGACCTCAAATATACTGCTCGACGAGAATTACAATGCAAAAATAGCAGACTTTGGGTTGGCTAAAGGGCTTCCTGGGGAACAATCACATGTAAATACCACCAGGGTCATGGGCACCTTTGGTTACCTTGCACCAGAATATGCCTCAAAAGGAAACTTATATGTGAAGAGTGATGTATATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGGGGAGATTTGAGGCAAGGCGAACAGGGCAGCCGAAAAACCCGGTTGAATGGACAGCTTTCTTTTTGGAAAATGAGTTGAATAGCATGATTGATTGTAGGATAAAGGATCAAATTTCACCCATGGCTGCATTAGAATCAGCACGACTCATTATGAAATGCCTAGTGCATGACCCTCAACAACGTCCTTCAATGGAACAAGTACTTCAGGGATTGGAGGCTATTCAATATATCCATTCCTGA 1047 0.4422 MTGSVPLFSGSSDIRRKSQFSVGESFERECSPLPFSGGQILKWPELKVFSFEELKSATGNFKSDRLVGEGGFGRVYKGWLDENTLTPAKPGSGVEVAIKMFKPESKQGFAQWQSEVNFLGRLSHPNVIKLLGYCWDEDQFLLVYEFMPNRSLDYHLFETGNHEPLSWNTRLKIIIGAARGLAFLHANENKIILRDFKTSNILLDENYNAKIADFGLAKGLPGEQSHVNTTRVMGTFGYLAPEYASKGNLYVKSDVYGFGVVLLEILTGMGRFEARRTGQPKNPVEWTAFFLENELNSMIDCRIKDQISPMAALESARLIMKCLVHDPQQRPSMEQVLQGLEAIQYIHS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00828 348 ProSitePatterns Protein kinases ATP-binding region signature. 67 99 IPR017441 GO:0005524
Vimu11g00828 348 PANTHER OS01G0588500 PROTEIN-RELATED 39 344 - -
Vimu11g00828 348 Gene3D Phosphorylase Kinase; domain 1 45 146 - -
Vimu11g00828 348 Pfam Protein tyrosine and serine/threonine kinase 63 338 IPR001245 GO:0004672|GO:0006468
Vimu11g00828 348 SUPERFAMILY Protein kinase-like (PK-like) 38 339 IPR011009 -
Vimu11g00828 348 ProSiteProfiles Protein kinase domain profile. 61 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00828 348 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 147 348 - -
Vimu11g00828 348 Gene3D Transferase(Phosphotransferase) domain 1 147 347 - -
Vimu11g00828 348 CDD STKc_IRAK 67 343 - -
Vimu11g00828 348 FunFam Serine/threonine-protein kinase BIK1 33 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00828 Vimu-Chr11 8586031 8588051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00828 37 346 Receptor kinase-like Gene Family AT4G02010 43.354 3.73e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu11g00828 PK_Tyr_Ser-Thr 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00828 - - vum:124825635 513.457