Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00793 ATGACTGGAGCCTTGATAGGTCAAGAGACAGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCTTCCATTGTTCTTTGGAAATCTGACGATTCTGGAATTGGGTGTGCCTTATACTTGATTGATATGGGTGCTGTTGAAATAAGCTTTGACGAGGTTCAAAACCTCTTTGATATTGGTGTGGCCAAAGGCTTACCGAGAGATTCGGTTGAAAAGATCCCAACAATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGGGAGAGAGCTTCATGTTCTGTTTGCCTCCAGGACTTTCAGCTTGGAGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTGATCAAACATGCTTCTTGTCCATTATGCAGAAGGGATCTATAA 456 0.4342 MTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSIVLWKSDDSGIGCALYLIDMGAVEISFDEVQNLFDIGVAKGLPRDSVEKIPTITITSDNNVDASGERASCSVCLQDFQLGETGRSLPHCHHMFHLPCIDKWLIKHASCPLCRRDL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00793 151 SMART ring_2 106 147 IPR001841 -
Vimu11g00793 151 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vimu11g00793 151 FunFam NEP1-interacting protein-like 1 66 151 - -
Vimu11g00793 151 CDD RING-H2_NIPL1-like 105 148 - -
Vimu11g00793 151 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 1 56 IPR044523 -
Vimu11g00793 151 SUPERFAMILY RING/U-box 105 151 - -
Vimu11g00793 151 Pfam Ring finger domain 105 148 IPR001841 -
Vimu11g00793 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00793 Vimu-Chr11 8228053 8229208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00793 1 151 C3H Transcription Factor Family AT5G66070 62.712 2.46e-73 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00793 - - gmx:100816939 274.633