Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00765 ATGGCTGCCGAGCGCAGACACGTTTTTGATAGATTACAGAGTTTGAGTTTTTTCACTTATTGGAAGAAAAGCACCACACCAGCAGGCAGACGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTCCAGTATGCCAGTACTCAATGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCGATGCTAGCCATCTTGATTGGTTTGCTCACTTTCCTCACATGGCATTTCACAAAGATTTATACAACAAAATCTCTTAACAGCTTGGCATACGACCTCCGTTATGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTCTGAATTCTACTTCTGAAATTACTACTGCTCAGGTTAAGCTGTCGCAGTATGTGATCAGAAGCCACACCACCAACCTTCCCACTCAAGCAGACCAAGTTGAGATGTACGACGCGATGAGAGCTGTGACGTGGGCACTGTTTGCCAGTAAAAAAGCTCTGAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGAAAACAACACCTTTTACATATATTCTGATCTTGCAAATTACTCCATGGCTGCCAGTGATCACAATGAGATCAATTCACTTTCATCGAACGAAGCTTGGAATTATAAAGATATTCACGGAAACAAGTCTGCAATCTGGTATCGGGAACCGCTTGATCCTGTCAGTGGAGAGAAGATTGGAAAAGTAATGCCAATTGCACCAGAAGACTCCATCAATATAGCAGGCATCTCCCAAGTACCTGACGGTGTAGCTTCGTGGCATGTTGCTGTTAGCAAGTTTACAGATTCACCATTGCTTTCTGCGGCATTGCCAGTTTGGGACTCTTCAAATAAAAGCATCGTGGCAGTTGTGGGTGTCACAACTGCACTTTATAGTGTGGGACAGCTCATGCAAGAGCTGGTTGAGTTGCACAGTGGTCACATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCACCTCTACTGTCGAATTCTACAAGGCCTCCGAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCACGGTGGCTACAGAAAACCTATGGCAACAATTTCCCTCAAAGTCATGAACTTCATGTAGAGAATGTCAAGCTAGGTCCCCAGCAATATTACATCGACTCATTCTTCCTTAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCCAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCGTTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACAAATGGAGTGTCAAAGGAAATGAAACTAAGAGCAGAACTCATCAGCCACCTGGAAGCCAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCAGCAGTAATCGGGTTACTCGACATTCTTATATCCGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGTTCAACTGCCCTGCTTCGTCTACTTAATAACATCTTGGACCTGAGCAAGGTGGAATCTGGAAAATTGGTCCTAGAAGATGCAGAATTTGATTTGGGGCGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATCAACCACAATGTAGAGACTGTTCTAGACTTGTCTGCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATGCTTGCAGTGATGATACGAATTTTCCACTAGAGCAAAAGAAATCACGGTGTTCACAGAAGAACAGAGCAAAACAACATGAAAACCATGCAAAGAGGATTTCCAATAGAGATAACAAAACAGTACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGAATCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACGGGTCTTGGTCTTTGCATTGTCAGAACCTTGGTTAACAAGATGGGTGGAGAAATCAAAGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGCGATTATACTTGCGTCTGAGTGCACCTATGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAAGGCTTAGTGGTACTTCTTGCACTACATGGCAGTATGGGTAGATCTGTTACATCTAAGTGGTTACAGAAAAATGGGGTAGTGTCTATGGAGGCATCAGAATGGAATGGATTAACACAAATGCTTAGGGTACTTTTTCATGCTAGAAGTTCAGCTCATAATAATGGTTTCGATGCAAATTATTCAGTGCATGAAAATTTAAAGTCGAAACTACTGAGCATTCAGGAATTGAGGAACCCAGTTTTTGTGATTGCTGTTGACATTGGACTACTTGACTTAAGCACAGATATATGGAAGGAACAGCTCAATTTCCTTCACAAATACTTTGGGAGAGCGAAATTCGTGTGGATACTAAAGCATGACTCCTCCAATACCATAAAGATGGAGCTTTGCAGGAAAGGGCATACACTGACAGTGAACAAACCCCTCTACAAAACAAAAATGCTTCATATTTTGGAAACCATTACAAAGGAAAGAAGTGACGAGCTACAAAAGAAAAATATGACTACTCCCAGAGCTACTACAGTGAAAGAGGGTTATTTGCATGAGAGTCTTGAGATAGATTATACTCAATGTGATGTTGCAAGCTCGGATGGTTCTGACATTTCAGAAACGGGAGGTTCTAATCCTGTTCGTGAAAGTGGAGATAAACAAAGAGAGAAGGTAGTGAGATCTGAATCATCATCACAACACCAGATAAATAACTTAGCTGGATTAGAAAATGGATATAAGGAAGATAATAATCCTTGGAAGGAAGAGTTATGTGAGAGCAGCCTCAAGTCTAAAAATGTCACTGCGAATGGCACACCAAAATCATCCTCCACTAAACAAGCATTGTTTGCGAAAGGCAGTCAAGGTAAAGATTCTGAATATGGCGAAACAGGAAGTGGCAGTAGCTCGAGAAGAACAGTGAGTGGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCAGAAGACACACCAGTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCATTGTTGTAGCTGTAGGTGATGGACAACAAGCAGTGGATGCTCTGAATGGCATGCCTGGAGTTGAAGATTGTAGAAGGGAGTCTATCATGAAAGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTTGCCCTCCGTATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGACGGCTATGAGACAACAAAAGCAATCAGGAAATCAGAAGCGGGAACTGGTTTTCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCTTAGAGGTTGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACAAGAAGGACATCTCCGACTTTTGTTTGA 3615 0.4191 MAAERRHVFDRLQSLSFFTYWKKSTTPAGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRSHTTNLPTQADQVEMYDAMRAVTWALFASKKALNSITVKYKNGFVQAFHRDLKENNTFYIYSDLANYSMAASDHNEINSLSSNEAWNYKDIHGNKSAIWYREPLDPVSGEKIGKVMPIAPEDSINIAGISQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMQELVELHSGHMYLTSQEGYLLATSTNAPLLSNSTRPPKLKMAVDCENEVIREGARWLQKTYGNNFPQSHELHVENVKLGPQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSAGHIILRGWCENPNACSDDTNFPLEQKKSRCSQKNRAKQHENHAKRISNRDNKTVLWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLRLSAPMDATEQHCQVDFANKGLVVLLALHGSMGRSVTSKWLQKNGVVSMEASEWNGLTQMLRVLFHARSSAHNNGFDANYSVHENLKSKLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILKHDSSNTIKMELCRKGHTLTVNKPLYKTKMLHILETITKERSDELQKKNMTTPRATTVKEGYLHESLEIDYTQCDVASSDGSDISETGGSNPVRESGDKQREKVVRSESSSQHQINNLAGLENGYKEDNNPWKEELCESSLKSKNVTANGTPKSSSTKQALFAKGSQGKDSEYGETGSGSSSRRTVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGQQAVDALNGMPGVEDCRRESIMKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYETTKAIRKSEAGTGFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTSPTFV 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00765 1204 SUPERFAMILY CheY-like 1047 1198 IPR011006 -
Vimu11g00765 1204 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 473 553 IPR036097 GO:0000155|GO:0007165
Vimu11g00765 1204 FunFam Histidine kinase 1-like protein 474 553 - -
Vimu11g00765 1204 Gene3D - 554 723 IPR036890 -
Vimu11g00765 1204 Gene3D - 474 553 - -
Vimu11g00765 1204 MobiDBLite consensus disorder prediction 1025 1041 - -
Vimu11g00765 1204 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 641 719 IPR003594 -
Vimu11g00765 1204 PRINTS Bacterial sensor protein C-terminal signature 681 699 IPR004358 GO:0016310|GO:0016772
Vimu11g00765 1204 PRINTS Bacterial sensor protein C-terminal signature 646 660 IPR004358 GO:0016310|GO:0016772
Vimu11g00765 1204 PRINTS Bacterial sensor protein C-terminal signature 664 674 IPR004358 GO:0016310|GO:0016772
Vimu11g00765 1204 PRINTS Bacterial sensor protein C-terminal signature 705 718 IPR004358 GO:0016310|GO:0016772
Vimu11g00765 1204 Gene3D - 1031 1195 - -
Vimu11g00765 1204 ProSiteProfiles Response regulatory domain profile. 1050 1196 IPR001789 GO:0000160
Vimu11g00765 1204 MobiDBLite consensus disorder prediction 998 1018 - -
Vimu11g00765 1204 MobiDBLite consensus disorder prediction 932 985 - -
Vimu11g00765 1204 SMART HKATPase_4 562 721 IPR003594 -
Vimu11g00765 1204 PANTHER TWO-COMPONENT HISTIDINE KINASE 42 590 - -
Vimu11g00765 1204 SMART REC_2 1049 1192 IPR001789 GO:0000160
Vimu11g00765 1204 SMART HisKA_10 486 552 IPR003661 GO:0000155|GO:0007165
Vimu11g00765 1204 CDD HisKA 487 548 IPR003661 GO:0000155|GO:0007165
Vimu11g00765 1204 Pfam His Kinase A (phospho-acceptor) domain 487 552 IPR003661 GO:0000155|GO:0007165
Vimu11g00765 1204 Pfam Response regulator receiver domain 1051 1189 IPR001789 GO:0000160
Vimu11g00765 1204 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 636 725 IPR036890 -
Vimu11g00765 1204 ProSiteProfiles Histidine kinase domain profile. 493 721 IPR005467 -
Vimu11g00765 1204 MobiDBLite consensus disorder prediction 932 948 - -
Vimu11g00765 1204 CDD REC_hyHK_CKI1_RcsC-like 1051 1192 - -
Vimu11g00765 1204 MobiDBLite consensus disorder prediction 998 1041 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00765 Vimu-Chr11 8023499 8029303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00765 6 1197 Histidine Kinase Gene Family AT2G17820 61.676 0.0 1471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu11g00765 Response_reg 1.2e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00765 - - gmx:100801970 2102.79