Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00749 ATGGCGGAAGAAAGATTCACTGGAGTTGTGCAATGGTTCAACAATGGAAAAGGCTTCGGGTTCATCAAGCCTGACGACGGCGGCGAGGATCTCTTCGTCCATCAGTCCTCCATCAGATCCGACGGTTACCGCACTCTCCTCGAGGGCGATCGCGTCGAGTTCGCTATCGCCACCGGCGACAATGACAAGACCAAGGCCGTTGACGTCACCGGAATCGACGGCGCCCCTCTCCAGCCCCGTGCCGCCTCCGGCAATCGTGGCTCTGGGTACGGATTTGGCTCCAGGCGGAATGGCGCGGGCGGTGGCGGTGCCGCGTGCTATCAGTGTGGCGATTTCGGCCATCTGGCTAGGGACTGCAACCGAAGCAGCAATTCCGGCGGCGGAGGCGGTGGTGGGTGCTTTGTTTGCGGCGGGTTCGGTCACCTCGCGAGGGATTGCGTGCGCGGAGGCAACGGTGGAGGAGGAGGAGGCGGAGGCGGAGGCGGCTCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGCGCGACCGCGAAGAGCGTCGGTGGTGGTGGTGGTAGTGGTGGTGGTTGTTTTCGGTGTGGGGAGGTAGGTCATTTGGCTAGGGATTGCAGCATTGAAGGAGGAAGGTACGGCGGAGGTAACAGTGGCGGCGGCGGTGGTGGCGGCGGCGGTGGGAAGAGCACCTGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGTGTTGAGGCTTCCGTGTGA 753 0.6202 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGIDGAPLQPRAASGNRGSGYGFGSRRNGAGGGGAACYQCGDFGHLARDCNRSSNSGGGGGGGCFVCGGFGHLARDCVRGGNGGGGGGGGGGGSCFRCGGFGHMARDCATAKSVGGGGGSGGGCFRCGEVGHLARDCSIEGGRYGGGNSGGGGGGGGGGKSTCFNCGKPGHFARECVEASV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00749 250 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vimu11g00749 250 ProSiteProfiles Zinc finger CCHC-type profile. 193 206 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 Gene3D - 1 82 IPR012340 -
Vimu11g00749 250 ProSiteProfiles Zinc finger CCHC-type profile. 232 245 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 SUPERFAMILY Retrovirus zinc finger-like domains 154 208 IPR036875 GO:0003676|GO:0008270
Vimu11g00749 250 ProSiteProfiles Zinc finger CCHC-type profile. 133 146 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 ProSiteProfiles Zinc finger CCHC-type profile. 164 177 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 Pfam Zinc knuckle 231 245 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 Pfam Zinc knuckle 132 146 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 Pfam Zinc knuckle 163 178 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 Pfam Zinc knuckle 192 207 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 SUPERFAMILY Retrovirus zinc finger-like domains 99 148 IPR036875 GO:0003676|GO:0008270
Vimu11g00749 250 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Vimu11g00749 250 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Vimu11g00749 250 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Vimu11g00749 250 Gene3D - 159 186 - -
Vimu11g00749 250 Gene3D - 188 213 - -
Vimu11g00749 250 Gene3D - 225 249 - -
Vimu11g00749 250 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Vimu11g00749 250 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 SMART c2hcfinal6 231 247 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 SMART c2hcfinal6 132 148 IPR001878 GO:0003676|GO:0008270
Vimu11g00749 250 PANTHER COLD SHOCK DOMAIN PROTEIN 2 183 247 - -
Vimu11g00749 250 Gene3D - 102 154 - -
Vimu11g00749 250 SUPERFAMILY Retrovirus zinc finger-like domains 214 245 IPR036875 GO:0003676|GO:0008270
Vimu11g00749 250 SMART csp_8 7 72 IPR011129 GO:0003676
Vimu11g00749 250 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vimu11g00749 250 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vimu11g00749 250 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00749 Vimu-Chr11 7916058 7920242 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vimu11g00749 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00749 K09250 - gmx:100806783 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00749 11 7916058 7920242 Vimu11g00749 11 7916058 7920242 ECH