Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00746 GCCAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCTCCCAAGCCCTCATCTGGACCACACAAATCTAGGGAATGCCTGCCACTCATTCTCATTTTGCGAAACCGGTTGAAGTATGCCCTGACATACCGTGAAGTCATTGCTATTCTGATGCAACGACATGTCCTCGTTGATGGCAAAGTCAGGACAGACAAGACATATCCTTCTGGTTTTATGGATGTTGTATCCATCCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACTAAAGGTAGATTCCGTCTTCACTCAGTCAGGGACGAGGAAGCTAAGTTCAAGCTCTGCAAGGTTCGGTCAGTGCAGTTTGGGCAAAAGGGCATCCCATACTTGAACACCTATGATGGGCGCACTATCCGCTATCCAGATCCTGTCATCAGAGCCAATGACACCATTAAGTTGGACTTGGAGGAAAACAAGATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGGAATAGAGGGCGTGTTGGAGTGATCAAGAGCAGAGAGAAGCACAAGGGAAGCTTTGAGACTATCCATGTTCAAGATGCTACTGGGCACGAATTTGCAACTCGTATGGGCAATGTGTTTACCATTGGTAAGGGAACAAAACCTTGGGTATCTCTTCCCAAGGGTAAAGGTATTAAGCTTTCGATCATCGAGGAAGCTAGGAAGAGGATTGCCACCCAACAAGCTACTGCTGCTTAA 792 0.4596 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKSREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRIATQQATAA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00746 263 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 253 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vimu11g00746 263 Pfam S4 domain 46 89 IPR002942 GO:0003723
Vimu11g00746 263 FunFam 40S ribosomal protein S4 1 116 - -
Vimu11g00746 263 Pfam RS4NT (NUC023) domain 2 38 IPR013843 -
Vimu11g00746 263 Gene3D - 174 244 IPR014722 -
Vimu11g00746 263 Gene3D - 121 171 IPR038237 -
Vimu11g00746 263 SMART s4_6 41 105 IPR002942 GO:0003723
Vimu11g00746 263 Gene3D - 1 116 IPR036986 GO:0003723
Vimu11g00746 263 ProSiteProfiles S4 RNA-binding domain profile. 41 103 - -
Vimu11g00746 263 CDD S4 50 111 - -
Vimu11g00746 263 FunFam 40S ribosomal protein S4 174 244 - -
Vimu11g00746 263 Pfam KOW motif 176 209 IPR005824 -
Vimu11g00746 263 CDD KOW_RPS4 174 228 IPR041982 -
Vimu11g00746 263 PIRSF RPS4a_RPS4e 1 240 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vimu11g00746 263 FunFam 40S ribosomal protein S4 121 171 - -
Vimu11g00746 263 SMART kow_9 173 200 IPR005824 -
Vimu11g00746 263 Pfam 40S ribosomal protein S4 C-terminus 211 257 IPR032277 -
Vimu11g00746 263 Pfam Ribosomal family S4e 94 168 IPR013845 -
Vimu11g00746 263 Hamap 30S ribosomal protein S4e [rps4e]. 6 237 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vimu11g00746 263 ProSitePatterns Ribosomal protein S4e signature. 7 21 IPR018199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00746 Vimu-Chr11 7889496 7890901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00746 1 261 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.188 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00746 K02987 - gmx:100795220 508.834