Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00743 ATGGAGGCTGAGGCGCAAATCTCTCACGATTCAAATACTCAATTTCAGCCAGAGCCTGTTGTCTCAGTTCAAAAAGGGGATCCCGGTGTTTCCTCATCTGTGGCAAATGCTGTTATCCCTCAGCAGCCAGCTACAAAAAAACCAACCAGGCAGTGGGCTGCCTGGACTCGACAAGAGGAGGAGAGTTTCTTCACTGCATTGCGACAAGTAGGGAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAAGATCAGGTCAGGCATTATTACTACCGGCTTGTGAGGCGGATGAACAAACTTCTTGGTCCAGGACTATGTTTGGATGCCAAAAACTCTAAAGATACTAATGCTGCAATGCTTCGCTGGTGGTCTTTATTGGAAAAGTATAGCTGCAAAGCCTCAAAGCTTCACCTGAAGCCCCGGAGATTTAAAATATTTTTAGAAGCCTTGGAACATCAACTTTTGAAGGACCGAAAGAAGAATGTAAGGAAGCGACCTCTGCAGGGGGGGAATTGTCTTCCTCCCGTGCCTACCACAGTCTCAAATCAGGGTAGAGCATCAGGAAACGAGGCCCGTGCAGTTAAACTGGTTCTTGTTGATAGTCAAAATATTTTAAAATTGGGACCTTCAAAATCATCAATGAAGCGCAATATAAACATGGGTGTTAGCCGGAGTAACACTAAGGGAGATTCAAATACCATGAAATCGACAAGGCAACGAAAGAAATCTGGTATGATTTCAACTGCTGCGTATAGAAAATGGGAGAAGGCTGCAATTGCTGGCGTTTCTTTAGTTGCAGATGCTGCTGAGCATTTGGAGCGAGCTGCAACTGTTAGAGAGATTGAACAAGACCAGGAGAATCCAGGCGAAAAGTCTTCTGATCCAACTGATTATGTCCTGCCATCTTTACCCTCATGTCCGCAAAATCAATTTGTTGATAACAATGTGAATGGTATGAAACTTAAGCTCCAGTTATTCCCAATCGATGAACCCACTCGAAGAGCATTGGAAGTGGATAAGCATAATCCACACCTGGAGCTAACACTTAGTACTCGAAAGAAGATATCCTCAATTTTGGAACATCTAAACCGTAAATGGGGTCATTCTAGCATAGCAGTTGGAGAATTAATGCTTTTTCCTTATGGTGTTCAAAGGGAAAATTTGTTTAATTATCAGAGATGGTCCCAGGAATCTACTCTGAGTGCAGCTGATATTTATGCAATGATTGGAAGTCCACCCATATTTCGTTTAAGGTATGGTTGGTTCTCCAATTCTGAACTTGGGTTATTAAATATGCAAGTGCCTGTAGCATCCGGCTCCATCCTCGCACAATCCAAAAGTAGTGTGTATAATTCTAAGGATCAGATTGTGAATTCAGTTTCATTTCCTACGGCAGCAGCTAATACTCATTCCATGGAGCTCTCTGAAGGTTGCAGAATATCCATGAACAGAAATCATACTCTCATGACCTCCTCACTTGGTGTGCCTAACACTAGAGGCAACAGTGCATACCTCAATACAAGCTCTGAGGAATCTCGTCATCCTACAACCAACACATCGTGGCATGAAAAAGATGTCAGGGATGGAGCTGTAACTACGCAGTTAGAAGACTTGGAAGAGTTGAAATTAAGCAGTGGAACAGGACTGTCAGCTGGAGAATGGGCTGACAGTCTTACCAACATTAGTGTGGGGGATCTACTTTCAGGAGTGTCCCAGGATCTCGAAGATGACTGCATCAATCCACCTATTGCTGAAAATTGTCATGATGTTCAGCAAGTTCCTTTTAGTAGCGATTCTTTTGATGCTGCTATTGCCGCTCACATATCTAGACACCAAGACAAGATGGGACAATCGTCGCTGGCAGCCCATATGTCTTCCATATGGGATGCTGAAGAAACTTGTGATGCCTTTATATTTCGAAGAGATCACATTCTTCATGCTGATCGTCCTTGTTTGTCTCCAGTTGCTTCTTTAGAGTCCGAGAAAAAGGTTCCTGAAAGAAGCTTTGAGAAATTGGATGAGTTGTCACCGGAAAGAGAGGGGCTTGTGGATGATTTTGTTCAATCAGACCCTATGCCTATGGACAGTTCCGAGTCCGATGCAGATATCCAGGATCATTTAGGAAAGGATTTTGGTGCGCTAGCAGATATATATTGGCCTGATTCCTTGGGACCTTTGGATTTGGATATACCATCATCAACAAAGTACCATACCGAGGATCTAATTTTTAGTGACAGTCTTAGTGGACTGAATCGCTTGATAGCAAGCAGCCTGGATGCATTTCAGAATTGCTCCTTTTTTGGGTTTGACAAGAAGGAAGCACCGTCAACAGTTGAGGCTCGAGAATCTGCCACTCTCTCAGATTTTAAAATTGGAAGTGGTATCTGA 2397 0.4314 MEAEAQISHDSNTQFQPEPVVSVQKGDPGVSSSVANAVIPQQPATKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKIFLEALEHQLLKDRKKNVRKRPLQGGNCLPPVPTTVSNQGRASGNEARAVKLVLVDSQNILKLGPSKSSMKRNINMGVSRSNTKGDSNTMKSTRQRKKSGMISTAAYRKWEKAAIAGVSLVADAAEHLERAATVREIEQDQENPGEKSSDPTDYVLPSLPSCPQNQFVDNNVNGMKLKLQLFPIDEPTRRALEVDKHNPHLELTLSTRKKISSILEHLNRKWGHSSIAVGELMLFPYGVQRENLFNYQRWSQESTLSAADIYAMIGSPPIFRLRYGWFSNSELGLLNMQVPVASGSILAQSKSSVYNSKDQIVNSVSFPTAAANTHSMELSEGCRISMNRNHTLMTSSLGVPNTRGNSAYLNTSSEESRHPTTNTSWHEKDVRDGAVTTQLEDLEELKLSSGTGLSAGEWADSLTNISVGDLLSGVSQDLEDDCINPPIAENCHDVQQVPFSSDSFDAAIAAHISRHQDKMGQSSLAAHMSSIWDAEETCDAFIFRRDHILHADRPCLSPVASLESEKKVPERSFEKLDELSPEREGLVDDFVQSDPMPMDSSESDADIQDHLGKDFGALADIYWPDSLGPLDLDIPSSTKYHTEDLIFSDSLSGLNRLIASSLDAFQNCSFFGFDKKEAPSTVEARESATLSDFKIGSGI 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00743 798 PANTHER CRAMPED PROTEIN 37 771 - -
Vimu11g00743 798 MobiDBLite consensus disorder prediction 1 49 - -
Vimu11g00743 798 MobiDBLite consensus disorder prediction 212 247 - -
Vimu11g00743 798 FunFam TSL-kinase interacting protein 1 16 104 - -
Vimu11g00743 798 Gene3D - 12 104 - -
Vimu11g00743 798 SUPERFAMILY Homeodomain-like 46 101 IPR009057 -
Vimu11g00743 798 FunFam TSL-kinase interacting protein 1 55 116 - -
Vimu11g00743 798 Pfam Myb-like DNA-binding domain 54 96 IPR001005 -
Vimu11g00743 798 SMART sant 51 99 IPR001005 -
Vimu11g00743 798 MobiDBLite consensus disorder prediction 282 302 - -
Vimu11g00743 798 MobiDBLite consensus disorder prediction 165 189 - -
Vimu11g00743 798 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Vimu11g00743 798 ProSiteProfiles SANT domain profile. 55 101 IPR017884 -
Vimu11g00743 798 CDD SANT 54 97 IPR001005 -
Vimu11g00743 798 MobiDBLite consensus disorder prediction 509 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00743 Vimu-Chr11 7864349 7870331 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu11g00743 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00743 - - gmx:100798411 1380.93