Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00741 ATGGGAATTTGCTATTCCGCCACCAAAGTCAGCGGCTCCAATGGCAACGCCATCACCGACAAGAAAAATCCCAAGCGAGCCGCGAAGCCAGAATCTCCGATAGCGGCGGCCAATCGCGAACGGCACAAGGCAAGTGCGCGGCAGGTGCCTTGCGGAAAGCGCACTGATTTCGGTTACGACAAAAATTTCGATAAGCGATACACGCTGGGCAAATTGCTGGGACACGGCCAATTCGGTTACACCTACGTAGGAATCGACAAAGCTAATGACGATCGTGTCGCCGTTAAGAGGATCGATAAGAGTAAGATGGTTCAGCCTATAGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCGCTCACTGGCCACGAGAATGTGGTTCAGTTCTATGATGCTTTTGAAGATGATTCTTACGTGTATATAGTTATGGAGTTATGCGAGGGCGGCGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATTCTGAAAAAGATGCAGCAGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTGCACCGGGACATGAAACCAGAGAATTTTCTTCTGAAATCGACCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCGGATTTCATTAAACCTGGAAAGAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTATTAAAACGCAAGTCTGGCCCACAATCAGATGTGTGGAGCATTGGTGTTATTACATACATATTGCTGAGTGGGAGACGTCCATTTTGGGATAAGACCGAGGATGGTATTTTTAAGGAGGTTTTACGGAAGAAGCCTGATTTCCAACGGAAACCATGGCAAACTATAAGTGATGCCGCAAAAGATTTTGTGAAAAAATTACTGGTAAAGGATCCTCGGGCAAGGTTAACTGCTGCTCAAGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATCGGAGATTCCTATTGATATATCCGTTCTAAGCAACATGCGGCAATTTGTGAAATATAGTCGATTGAAACAATTTGCACTCCGGGTAAGAGAAATTAATGTGGACAAAAATGGTTCTATTAGTTTGGAAGAGATGAGACAGGCTCTTGCGAAAGATCTTCCTTGGAAGTTGAAAGAACCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAACACTGATGGGCTAGTGGATTTTAGTGAGTTTGTGGCTGCTACATTACATGTGCATCAGTTGGAGGACGACTCTGGCAAGTGGCAGCAGCGGTCACAGGCTGCTTTTGAGAAATTTGACTTAGATAAAGATGGCTATATTACTCCAGAGGAACTTAAAATGGTTGGTATCACAACTTTTGTGAATGCCCCTATACGGCTATCGCTTCTCAGTTTTAGGCGATACACATTTCATACAGGCTTGAGAGGCTCCATTGATCCTTTGCTGGAGGAAGCTGATATCGACAAAGACGGAAAAATCAGCCTATCAGAGTTCCGTAGGCTTCTAAGGACTGCGAGCATGGGTTCTCAAAAGGTTTCAAGCCCAGCTGTGTATAAACGGAGAGTCTAA 1602 0.4488 MGICYSATKVSGSNGNAITDKKNPKRAAKPESPIAAANRERHKASARQVPCGKRTDFGYDKNFDKRYTLGKLLGHGQFGYTYVGIDKANDDRVAVKRIDKSKMVQPIAVEDVKREVKILKALTGHENVVQFYDAFEDDSYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLLKSTKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLSGRRPFWDKTEDGIFKEVLRKKPDFQRKPWQTISDAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMRQFVKYSRLKQFALRVREINVDKNGSISLEEMRQALAKDLPWKLKEPRVLEILQAIDSNTDGLVDFSEFVAATLHVHQLEDDSGKWQQRSQAAFEKFDLDKDGYITPEELKMVGITTFVNAPIRLSLLSFRRYTFHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASMGSQKVSSPAVYKRRV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00741 533 ProSiteProfiles EF-hand calcium-binding domain profile. 492 519 IPR002048 GO:0005509
Vimu11g00741 533 ProSiteProfiles EF-hand calcium-binding domain profile. 353 388 IPR002048 GO:0005509
Vimu11g00741 533 Pfam EF-hand domain pair 437 513 IPR002048 GO:0005509
Vimu11g00741 533 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Vimu11g00741 533 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Vimu11g00741 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vimu11g00741 533 SMART serkin_6 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00741 533 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Vimu11g00741 533 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vimu11g00741 533 ProSiteProfiles Protein kinase domain profile. 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00741 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 506 - -
Vimu11g00741 533 Gene3D Transferase(Phosphotransferase) domain 1 153 334 - -
Vimu11g00741 533 CDD STKc_CAMK 66 326 - -
Vimu11g00741 533 Pfam EF-hand domain pair 370 419 IPR002048 GO:0005509
Vimu11g00741 533 SMART efh_1 357 385 IPR002048 GO:0005509
Vimu11g00741 533 SMART efh_1 435 463 IPR002048 GO:0005509
Vimu11g00741 533 SMART efh_1 394 422 IPR002048 GO:0005509
Vimu11g00741 533 SMART efh_1 488 516 IPR002048 GO:0005509
Vimu11g00741 533 Pfam Protein kinase domain 67 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00741 533 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Vimu11g00741 533 CDD EFh 363 418 IPR002048 GO:0005509
Vimu11g00741 533 SUPERFAMILY EF-hand 355 514 IPR011992 -
Vimu11g00741 533 CDD EFh 437 514 IPR002048 GO:0005509
Vimu11g00741 533 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Vimu11g00741 533 Gene3D Phosphorylase Kinase; domain 1 60 152 - -
Vimu11g00741 533 FunFam calcium-dependent protein kinase 28-like 153 346 - -
Vimu11g00741 533 FunFam CDPK-related kinase 1 60 152 - -
Vimu11g00741 533 MobiDBLite consensus disorder prediction 11 47 - -
Vimu11g00741 533 Gene3D - 335 517 - -
Vimu11g00741 533 FunFam Calcium-dependent protein kinase 28 353 420 - -
Vimu11g00741 533 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00741 Vimu-Chr11 7829170 7837550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00741 19 529 EF-hand Containing Proteins AT2G17890 74.109 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu11g00741 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00741 K13412 - gmx:100798941 886.33