Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00720 ATGCCATCGATTAAGCTTCCATCTGGGGCGAAGAAGATTGTCCCAAGTGACTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGTGGAAGGACTGAGAAGCCTCTTCTTAAGGCTGGAAATGCTTACCACAAGTTTAGGGTGAAGAGGAATTGTTGGCCCAAGGTGCGTGGTGTTGCTATGAATCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGTCATGCCAGTACTGTCAGGCGTGATGCTCCTCCTGGTCAAAAGGTTGGTCTCATTGCCGCTAGGAGGACTGGTCGTCTTAGAGGACAAGCTGCTGCAACTGCTGCCAAGGCTGATAAGGCTTAA 351 0.5157 MPSIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00720 116 SMART Ribosomal_L2_C_2 1 87 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu11g00720 116 Pfam Ribosomal Proteins L2, C-terminal domain 3 83 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu11g00720 116 PANTHER RIBOSOMAL PROTEIN L2 4 110 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu11g00720 116 SUPERFAMILY Translation proteins SH3-like domain 3 102 IPR008991 -
Vimu11g00720 116 ProSitePatterns Ribosomal protein L2 signature. 53 64 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vimu11g00720 116 FunFam 60S ribosomal protein L2 26 103 - -
Vimu11g00720 116 Gene3D Ribosomal protein L2, domain 3 26 104 IPR014726 -
Vimu11g00720 116 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00720 Vimu-Chr11 7698828 7699707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00720 4 114 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.694 1.59e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00720 K02938 - gmx:100802137 194.897