Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00716 TTGGGCCCAATCCAACCCACGCAACCACACCACTCGAAGGTATCGTTTCGTCAGTGTTGCATCTATGCGCTGTCACTGCCAACACAAGCCACCATCACCCTCTCCCTAGATTTTCCTAATCTCACGCCCCGTTCACCCCTCACCCTCACCGTCAAACTCTATATAAGGATAACCACCTCCCCCGAAACGACACTCTTTCTTTCTAGGGTTTTCCCTTTCAAATCTCTCCCTCTCTCTTCTCTCTCTCTCTCCCTCTCTCTATGCCGACGAGCAAGGAAATCCAACCGGGTTTCGTGGGCCACTGGAGGGAACCTTTGTCAGCCTAGACCTCGTCATTGTCATCGTGCTCTGCTACCTGGGATCCTACTCATGTGTTACACAGCATCAGCGAGTCTTCACTTACTGTCTATCTCTGTTGTTGCCCTTGCGACCACACTGTTGATACTACTCATGTCCAGCAGTTCATGGAGAACAAAGTGGCATATGATGTGCTTTGGTGCTTCAGCCCTCTTTATTTCTAGCAAAACAGGAGAGGAAGAGGGCCAACATTCGCAAGATCATCTTCAAGTAAAGACATCGATGCTAAATTCAAATTCCGCCATTAATGATCATACCGATTTGCCCCCTGGGTTTGAAAGCAGTCATTTCCTAAAACAAACAAGGGTTGATTTGTCCTGCATTTCCCAGATAAAATGGGAATGTCCTCCGCCGTTTATTCTCAATCCTGAATGGCGTGTTGTGGAGGGTGAAGAAAGTAGGGAGAAAGAAAATCAGAAAGCGAGAGAAAATAGGGTGCTTGAAGCTGTTTATCCCCGTCTTTCAGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGACGTAGAAGAGGAAGATTATAATGATGACGTTACTCCCCTCATCCCTATCATTCCCATTGAAGAGGAAGAACCTGTGGATATTTTACCTGAAGTGGCAGTAGCTGGGAACCCCTTCCCCAATGTGCAGCCGAATAACCCTCTGCAATATATATCTGCTGAAACTTCCATTCGTTCACCCTCAAACGCCTTTTATACTGATTCCTCGGATCCCTGTACAGGGATCCCCTTGGGTGGGGGGGTATCTTTCGGTATGGAAGCTGATTTGGCAGCTTCGGTTGTTGCAACCATTATGAGGAGTTCTGAGCAGGGATCCCCGATTGATATGGATTTACTGGTTAAAATATTTAATGATCCCAAAATGCTCGACAAGTTGATTAATGAACATAGAACTGCAGCAACCACCACAAGTGCTTCCACAAGTACTCTGGATACAACTCCTGGTGTTAAGCCTGACACTCCAGTTCTGTTGACTACATCTGATGTGAAAGCTTCGGGGGCTACACCTACAAGTGCAGTGGGTTCATTGCCTTTTGGTCTGAAAACTACATATCCATCAGTTTCAGTATTGAGTCCTACACCTGACAAATCATCCACTAGGTCAGTGCCTGCAGTTCCATCAGTCTCACTGTTCTCTCCGGCTCATGATAATCCAGTCACTGCATCAGTTCCATTGTCTAGGCCTTTATCTGGTAAGCCAGGAACACCCTCAGTTTCATTGCTCACAAATACACCTGCATCTCATATACCCAGGTCTGTTAGCAAACAAATTCACCATGTGTCAGGTGGTATTTCCCCTGCATTAAATACTCAGCCTCAGCAAGATACAGCTCTGGCATCTGGGCCAAAGCGAGCCGCTGCAATGGCTGGTGAATTAAGCACTGGTCCAGTGCCATCTCTTACCAGGAACTTGCATTCTGTTGTGAATCCGGTGCAATCCCCTGCTAGTACATTGCCTTATAAACTAAGCACAGGTTCATCAGCATTTGCTGTAAAGGATGCCAACTACTATAAAAACCTCATCAGGCAACATGGGGCAGATAAGCAAGATATGCAGGACTCACACATAGGTATTCGTCATAGTTATCTCCACGATATGAAACCGGTACATAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCTCAAAAGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCACGATGTTTCAGCTCAGTGGGGAGCTGCTAACATCTTAGGGGCACAGAGTGCAAAAAGATTGAAATCGGGACCATAG 2118 0.4632 MGPIQPTQPHHSKVSFRQCCIYALSLPTQATITLSLDFPNLTPRSPLTLTVKLYIRITTSPETTLFLSRVFPFKSLPLSSLSLSLSLCRRARKSNRVSWATGGNLCQPRPRHCHRALLPGILLMCYTASASLHLLSISVVALATTLLILLMSSSSWRTKWHMMCFGASALFISSKTGEEEGQHSQDHLQVKTSMLNSNSAINDHTDLPPGFESSHFLKQTRVDLSCISQIKWECPPPFILNPEWRVVEGEESREKENQKARENRVLEAVYPRLSAIPPSPSVSLDVEEEDYNDDVTPLIPIIPIEEEEPVDILPEVAVAGNPFPNVQPNNPLQYISAETSIRSPSNAFYTDSSDPCTGIPLGGGVSFGMEADLAASVVATIMRSSEQGSPIDMDLLVKIFNDPKMLDKLINEHRTAATTTSASTSTLDTTPGVKPDTPVLLTTSDVKASGATPTSAVGSLPFGLKTTYPSVSVLSPTPDKSSTRSVPAVPSVSLFSPAHDNPVTASVPLSRPLSGKPGTPSVSLLTNTPASHIPRSVSKQIHHVSGGISPALNTQPQQDTALASGPKRAAAMAGELSTGPVPSLTRNLHSVVNPVQSPASTLPYKLSTGSSAFAVKDANYYKNLIRQHGADKQDMQDSHIGIRHSYLHDMKPVHKHKIQKPCIYFKSSKGCRNGSNCPYQHDVSAQWGAANILGAQSAKRLKSGP 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00716 705 MobiDBLite consensus disorder prediction 416 432 - -
Vimu11g00716 705 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 87 703 - -
Vimu11g00716 705 MobiDBLite consensus disorder prediction 416 438 - -
Vimu11g00716 705 ProSiteProfiles Zinc finger C3H1-type profile. 657 684 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00716 Vimu-Chr11 7661029 7667899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00716 229 320 Homeobox Transcription Factor Family AT4G02560 40.000 5.58e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu11g00716 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00716 - - pvu:PHAVU_003G260700g 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00716 11 7661029 7667899 Vimu11g00716 11 7661029 7667899 ECH
Vimu11g00716 11 7661029 7667899 Vimu7g03043 7 25643535 25644466 PCT