Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00715 ATGAGAACACGAAATGCTGATCCCTCTTCCAAATCCGCAACCCCTAAGAAGACGCCACCGCCGAGGAAATCCCCTGCGGCGAAGCGCACACCCGCCACCAAAACCAGAAGCACAAAGAAGAAAGAGGTCTCACCCGCAACCGATTCCAAAACTTATCAATCTCCTGTGGAGCAGAAACCGGTAGCTAGTGGTAGCAGTACAAAAACTTCGAAAAAAAGGGCTCCAGGGAGACCTAGAGTTAAAGCAATTGATACTCCGAATTTGGAAGAACAACGTGAGGCAGTAGCTGATGAAACTCCTATTGAAGACAAAACCGAGGCTGCAGAAAAAGTGGAGGATGTTGAAGTTGTTGATACAAATAATATTGAGGTTGAGAAAGAGGGGGAACAAGGTGTTGGGTTTTCTGAAGAGAAGGAACAGAAGTGGATGGAAGTGGATGAATCTGTTGTTGAAAAGGGGAATGACGTAATGGAAGTTGAAGTAACTGCTTCACAGGATGTTTCTGTTTCTTTTCAGCGACTACGACGGCCCATTATGGACCTCAATATATCTGCAGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAAGCAAAGGAAGTGTTCAAAGATCAAGAGGGGGACAAGGGAAAGGAGAAGGTGAAAGAACAGGAAGGAGATGGAGGGAAGGAAGAGGTGAAAGTGCATGAAGGGGACAAAGGAGAGGAAGAGTTGAAAGAACTGGAAGGAGACAAAGGAATGGAAGAGTTGAAAGAACTGGATGGGGAGAAAGAAAAGGAAGAGTTGAAAGAAAACGAAGGAGAGAAAGGTAAGGAGGAATTGCTAGAACGGGAAGGAGAGAAAGGTAAAGAAGAGACGATAGAACAAGAAGGACATAAAGTAAAGGTTGAATTGAAAGAACAGGAAGTAGAAAAAGGGAAGTTGAAAGAGCAGGATCCAGAGAAAGCAGAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACACTGAGTCGCTTGGTCTAGAAATGAAAGCCCAGGTGCAAACAGAAGATGCTAATCCCATTAAAGATGATGGTGAAGGACCCAAGAGCGGTAAAAAGTTAGATCTTCGAGGACAAGGGGAGGTGGAGCTTGCTGAAGAAGATCCGGAGGAAGATCCAGAAGAAGACCCAGAAGAAGATCCAGAAGAACCTCTAGATGAAATTGGGACTTTGGAGGAGGAGCATAGGGAATTGGAGGCCATTGCAAATCAACGAAAGATTAAAAAAGAGCATGAGATCTTTGTTGGTGGGTTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTCCAGAGGATGGGGGAGATACTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCTAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGTAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACAAAAGAAGCTATTAAACAGAAGCTGAAGGACTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACAAGAGGGCTTGAGCCGGGGCTTTGCATTTGTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCCGATGTTATCTTTGGCCATGCTGAACGAACTGCCAAGGTAGCCTTTGCTGAACCCATGCGTGAACCTGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACACTGGGACGAAGATCATGTGAGGGAGCTATTCAAATCTTATGGTGAAATTGTGAGAATCGTCTTAGCACGGAATATGTCTACTGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTTTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAAATGGGTGATGCGGCATCAAAGGTATTCACTCTTGCTTTTTACTTGACCTTGAGTTTACATGCAGGTGCCATAGTTCCGAATGCACAGTTTTACCATTGTCCTCATGTTAAGATAAAAGTGAGAGCTAGACTTTCAAACCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGCAGCCTTTTCAAGACCAGTCCCTACTAGAGGGAGGGGGTTTGGACGAGGAAGGCAGCCCTTCAACAACAGGGGAAATTTCAACAGGGATAAGAGTTTCTATCACGGTGGACACAGTCAAATTGGAAGAATGAGTTTTCGGGATGACCTTGATTTTAATATGCATCCAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCTGGTAACCGAGGTGCTCCATTTGCTGGACCGACTAGACCTTATCATGACAGAGCATGGTATGGTATGCCTGATGGAGGTCCCACTGAGCCTATTCCTCCAAGGAGGAGCTACTCCCCTGGTGGACAATTTGACATGCCTTTTATGGGAAGACATTATGATGATCCATATCTATATGATGACAATATGCATGGAATGAAACGTCCGTTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGACTTCGTCCCCGTTTGGATTATGCAGATCCTCCTATATTTCATGGAACTCGTCACCATGATTCTTTTGGGTCTGGCAGCGGACAGTACCCGCCTGACTACTATGCTTCCGAT 2781 0.4437 MRTRNADPSSKSATPKKTPPPRKSPAAKRTPATKTRSTKKKEVSPATDSKTYQSPVEQKPVASGSSTKTSKKRAPGRPRVKAIDTPNLEEQREAVADETPIEDKTEAAEKVEDVEVVDTNNIEVEKEGEQGVGFSEEKEQKWMEVDESVVEKGNDVMEVEVTASQDVSVSFQRLRRPIMDLNISADNEDCTGEKEGEKAKEVFKDQEGDKGKEKVKEQEGDGGKEEVKVHEGDKGEEELKELEGDKGMEELKELDGEKEKEELKENEGEKGKEELLEREGEKGKEETIEQEGHKVKVELKEQEVEKGKLKEQDPEKAEGEETNLFGHEENTESLGLEMKAQVQTEDANPIKDDGEGPKSGKKLDLRGQGEVELAEEDPEEDPEEDPEEDPEEPLDEIGTLEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRMGEILEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQQEGLSRGFAFVEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPMREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEIVRIVLARNMSTAKRKDYGFVDFFTHEAAVACVDGVNKSEMGDAASKVFTLAFYLTLSLHAGAIVPNAQFYHCPHVKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSAAFSRPVPTRGRGFGRGRQPFNNRGNFNRDKSFYHGGHSQIGRMSFRDDLDFNMHPDFRQRQFGPQGAVRGGHYAGNRGAPFAGPTRPYHDRAWYGMPDGGPTEPIPPRRSYSPGGQFDMPFMGRHYDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTRHHDSFGSGSGQYPPDYYASD 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00715 927 MobiDBLite consensus disorder prediction 889 927 - -
Vimu11g00715 927 MobiDBLite consensus disorder prediction 187 327 - -
Vimu11g00715 927 MobiDBLite consensus disorder prediction 736 764 - -
Vimu11g00715 927 CDD RRM_SF 600 666 - -
Vimu11g00715 927 MobiDBLite consensus disorder prediction 186 394 - -
Vimu11g00715 927 Gene3D - 585 673 IPR012677 -
Vimu11g00715 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 420 498 IPR000504 GO:0003723
Vimu11g00715 927 Gene3D - 337 494 IPR012677 -
Vimu11g00715 927 MobiDBLite consensus disorder prediction 47 71 - -
Vimu11g00715 927 SUPERFAMILY RNA-binding domain, RBD 589 668 IPR035979 GO:0003676
Vimu11g00715 927 Gene3D - 499 584 IPR012677 -
Vimu11g00715 927 MobiDBLite consensus disorder prediction 77 109 - -
Vimu11g00715 927 CDD RRM_SF 422 491 - -
Vimu11g00715 927 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 108 914 - -
Vimu11g00715 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 585 IPR000504 GO:0003723
Vimu11g00715 927 SMART rrm1_1 501 578 IPR000504 GO:0003723
Vimu11g00715 927 SMART rrm1_1 599 672 IPR000504 GO:0003723
Vimu11g00715 927 SMART rrm1_1 421 494 IPR000504 GO:0003723
Vimu11g00715 927 MobiDBLite consensus disorder prediction 373 394 - -
Vimu11g00715 927 MobiDBLite consensus disorder prediction 1 109 - -
Vimu11g00715 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 570 IPR000504 GO:0003723
Vimu11g00715 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 600 666 IPR000504 GO:0003723
Vimu11g00715 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 422 490 IPR000504 GO:0003723
Vimu11g00715 927 CDD RRM_SF 502 565 - -
Vimu11g00715 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 500 584 - -
Vimu11g00715 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 598 679 IPR000504 GO:0003723
Vimu11g00715 927 MobiDBLite consensus disorder prediction 346 372 - -
Vimu11g00715 927 SUPERFAMILY RNA-binding domain, RBD 421 565 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00715 Vimu-Chr11 7636481 7651863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00715 421 666 Eukaryotic Initiation Factors Gene Family AT1G71770 25.097 9.24e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00715 - - gmx:100784338 1288.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00715 11 7636481 7651863 Vimu11g00715 11 7636481 7651863 ECH