Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00713 ATGGAGTCATGTGTCCCACCTGGGTTTCGCTTCCACCCAACAGATGAAGAACTTGTGGGTTATTATCTCAGGAAAAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAGATCGACCTGTATCGCATTGAACCATGGGATCTCCAAGATTTGAGTTTGGCAGAGAGATGCAGGATTGGGTATGAGGAGCAGAATGAGTGGTATTTCTTCAGTCATAAAGATAAAAAATATCCAACTGGGACAAGAACCAACAGAGCTACAATGGCAGGGTTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTTATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCACGAGTATAGACTTGAAACTGTCGAGAATGGACCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTCAGGAAAAGAACCAACGGTCAAACGAAGACTATTGAAGGGTGGCATCGAAGGTACACATACGAGGATCCTATCGACCTTATGTTAAGGAAACCACAGCAGAACAATATTTCGGCTGAAAATATGTTGTACAAGAAAGAGACAAGGCTGATGCATGCAGAAGAAATGATGCAGCTTCCTGAGCTACAAAGTCCTTCCATCACAATAATGAAGAAGCAAAGCTCAACATCAGACAACATTAACAATGAGAAGGAGTTATCGAAAGTGACCGATTGGAGGGCACTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAAGAGAGGCATGAAATAGAAGGGATGTCAAGTTTTGGTGGTCAGACTGGGTCCCACATGCCATTCTTGCTACTCCACAATACTAATCAAAGGAACAAGTTCAACCCTTCTTCAGACTGTGACATTGGGATATGTCTATTTCAAACTTAA 933 0.4287 MESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQDLSLAERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFRKRTNGQTKTIEGWHRRYTYEDPIDLMLRKPQQNNISAENMLYKKETRLMHAEEMMQLPELQSPSITIMKKQSSTSDNINNEKELSKVTDWRALDKFVASQLSQEERHEIEGMSSFGGQTGSHMPFLLLHNTNQRNKFNPSSDCDIGICLFQT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00713 310 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 256 - -
Vimu11g00713 310 ProSiteProfiles NAC domain profile. 5 159 IPR003441 GO:0003677|GO:0006355
Vimu11g00713 310 Gene3D NAC domain 14 164 IPR036093 GO:0003677|GO:0006355
Vimu11g00713 310 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Vimu11g00713 310 FunFam NAC domain-containing protein 14 163 - -
Vimu11g00713 310 Pfam No apical meristem (NAM) protein 6 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00713 Vimu-Chr11 7629488 7631948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00713 1 308 NAC Transcription Factor Family AT2G18060 54.424 2.59e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g00713 NAM 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00713 - - gmx:100803726 460.299