Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00710 ATGGTGAGGGAAGATGGGAGAACTAAGGATGTTGGAATAGCTAACCAAACTCACAAAACACTCACACCTTACTCTCTTCTTCCCTTCACTGCCATGACTAAATTTCTCATCCTACTGTTATTGTGCGCACGCTTCTTATCATGCGCCCACTGCGCCTCTGTCACCGAGATCCAAGCCTTGACGTCGTTCAAGCTCAACCTTCACGACCCTCTCGGCGCGCTTAACGACTGGGACCCATCAACGCCGTTAGCTCCTTGTGACTGGCGTGGGGTTTCTTGCAAGAACGACCGAGTCACCGAGTTACGTCTGCCTCGCCTTCAACTCACTGGCCTACTTGCTGACCGCATTTCAGACCTACGCATGCTTCGAAGGCTCAGCCTTCGCTCCAACTCCTTCAATGGCACAATTCCCCAATCCCTCTCCAAATGCACGCTCCTACGCTCTTTGTTCCTACAGTATAACGACCTCTCCGGCCAACTCCCGCCGGAGATTGGAAACCTCGCCGCTCTCCAGATTCTCAACGTTGCCGGCAACAACCTCTCTGGTGAAATCCCCGCCGAACTTCCCCTCCGTCTCAAGTACGTTGACCTCTCCGCCAACGCCTTCTCCGGCCAGATTCCGACCACCATCGCCGGTCTTTCCGAGCTTCAGCTTATCAACCTCTCCTACAACAAGTTCTCGGGCCAGATTCCTGCGCGCATTGGAGAGCTTCAGAATATGCAATACCTTTGGCTCGATCACAATGTTCTCGGTGGAACCTTACCTTCATCTCTCGCGAACTGTTCCTCGCTCGTGCATTTGAGCGTGGAAGGGAACGCGCTTGCCGGCGTGTTACCGGCTGCGATTGCGGCCCTCCCGAACCTCCAGGTGTTGTCGCTCGCGCAGAACAACTTCACCGGCGCCGTTCCGGCTTCCGTTTTCTGCAACGTGTCGCTCAAAGCGCCGTCACTTCGCATCGTTCAGTTAGGGTTTAACCGTTTCACGGATTTCGCGTGGCCTCAAGCCGCCACGTGTTTCAGTGTTCTTGAGGTTTTGGATATTCAGCAAAATGGCGTGCGCGGCATGTTTCCGCTGTGGCTAACCAACGTGACGACGTTGTTGGTTCTCGACATTTCCGGTAACGCACTTTTCGGCGAGGTTCCGCCGGAAATTGGAAATCTCAGGAAATTGGAAGAGCTGAAGATGGCCAATAATTCGTTCTCAGGCGAGATTCCGCCGGAATTAGTAAAATGTAGGTCCCTGCGTGTTCTTGATTTTGAAGGAAACCGGTTTTCCGCTGAGGTTCCTTCGTTTATAGGAAATCTGACAGCGCTGAAGGTTCTATCTCTTGGTGTGAACCATTTCTCCGGTTCTGTTCCGGTGAGTTTTGGTGGGCTTGTTTCTCTTGAAACTATGAGTTTAAGGGGTAATAGATTGAATGGTTCAGTGCCAGAGGAATTGATGGGGTTGAAGAATTTGACAGTGTTGGACCTCAGTGTAAACCAGTTTTCTGGTCATGTTTCTGCGGAAATTGGGAATCTGAGTAAATTAATGGTTCTGAATCTGAGTGGTAATGGCTTCAATGGAGAAATTCCTTCTACTTTGGGGAATCTTTTCAGGCTCACAACTCTTGATTTGAGCAAACAAAATCTCTCCGGTAAATTGCCATATGAAATTTCGGGGCTTCCCAGTTTGCAGGTCATTGCTCTTCAAGAGAACAAGTTGTCTGGTGTGATACCTGAAGGTTTTAGCAGCTTGACCAGTTTGAAATACGTCAACCTAAGCTCTAACGAGTTTTCTGGGTATGTTCCTAAGAGCTATGGCTTTCTCCGGTCTTTGGCTGTTCTTTCATTGTCTAATAACCGCATCATGGGAATGATTCCCCCGGAAATTGGAAACTGCCCTGACATTGAAATTCTCGAGCTTAGATCAAATTACTTCGAGGGTCCCATTCCCCCGGATCTCTCTGGCCTAGCTCATTTGAAAGTCCTTGATTTAGGTAAGAACAACTTAACTGGGGCTTTGCCTGTGGATATCTCCAAATGCTCAGAGTTAACCGTTGTGTTAGCAGATCACAACGAACTTTCGGGTGCTATACCAGGGTCATTGGCCAAGTTATCACACCTAACTGTGCTGGATCTCTCTGCCAACCAATTGAGTGGCGAAATCCCCAGTAATCTAAGCATCATCCCCGGTTTGGTGTACTTCAATGTCTCAGGCAACAAATTAGAAGGTGAGATTCCACCAATGTTGGGTTCTAAATTCAACGACTCCTCTGTATTTGCAAGCAACCAGAACTTGTGCGGGAAGCCATTGGATAGAAAGTGCGAAGAGACAGACAATAGGGAGAGAAATAGGTCGATAGTGTTAATCATTATCATCGCGGTTGGAGCTTGCTTATTGGCATTGTGTTGCTGCTTCTACATCTCCAGCCTTCTGAGATGGCGCAGAAGGATCAAAGCAGCAGTGTCAGGGGAGAAGAAAAAGAGTCCAAGAACAAGTTCGGGAACAAGTCAAGGTCGAAGCAGCACTGACACCAACGGACCAAAACTCGTTATGTTCAACGCCAAAATCACACTAGCCGAAACAATCGAAGCAACAAGGCAATTCGACGAAGAAAACGTGCTGAGCAGAACAAGACATGGTTTAGTATTCAAGGCCTGCTACAACGACGGAATGGTCCTTTCCATTCGCAAGCTCCCAGACGGGTCACTAGACGAAAACATGTTCAGAAAAGAAGCCGAGTCGTTAGGAAAAATCAGGCACCGAAACCTAACAGTTCTCAGAGGCTACTATGCAGGCCCATCGGATGTTAGACTCTTGGTCTACGATTACATGCCCAATGGGAACCTCGCAACGTTGCTCCAAGAAGCATCACACCTGGATGGTCACGTTCTGAATTGGCCAATGCGACACCTCATTGCATTAGGAATAGCTCGTGGCATAGCGTTTCTACACCAATCCTCATTTATCCACGGTGACATCAAACCCCAAAACGTGCTCTTTGATGCAGACTTCGAAGCCCATTTATCAGATTTCGGGTTGGACAAGTTAACAGTTACCAACCCAGTCGAAGCCTCCACTTCAAGCACAGCTTCAGTTGGCACGTTGGGTTACGTGTCCCCGGAAGCTGTACTAACAGGGGAACCCACGAAAGAGTGTGACGTGTACAGCTTCGGCATCGTTTTGCTGGAACTTCTCACTGGGAAGAGACCGGTGATGTTCACGCAGGATGAAGATATAGTGAAGTGGGTGAAGAAACAGTTACAGAACGGTCAAATTGCAGAGCTACTAGAGCCTGGTTTGTTTGAACTTGACCCAGAGTCTTCGGAATGGGAAGAGTTCTTGCTGGGTGTGAAAGTTGGTCTGCTTTGCACAGCGCCAGACCCTCTTGATCGACCAACCATGGCTGACATCGTGTTCATGCTCGAAGGTTGTCGTGTTGGACCCGATATTCCATCCTCCGCTGAAACCGCACAACCTTCTCCGGTGTAA 3474 0.4899 MVREDGRTKDVGIANQTHKTLTPYSLLPFTAMTKFLILLLLCARFLSCAHCASVTEIQALTSFKLNLHDPLGALNDWDPSTPLAPCDWRGVSCKNDRVTELRLPRLQLTGLLADRISDLRMLRRLSLRSNSFNGTIPQSLSKCTLLRSLFLQYNDLSGQLPPEIGNLAALQILNVAGNNLSGEIPAELPLRLKYVDLSANAFSGQIPTTIAGLSELQLINLSYNKFSGQIPARIGELQNMQYLWLDHNVLGGTLPSSLANCSSLVHLSVEGNALAGVLPAAIAALPNLQVLSLAQNNFTGAVPASVFCNVSLKAPSLRIVQLGFNRFTDFAWPQAATCFSVLEVLDIQQNGVRGMFPLWLTNVTTLLVLDISGNALFGEVPPEIGNLRKLEELKMANNSFSGEIPPELVKCRSLRVLDFEGNRFSAEVPSFIGNLTALKVLSLGVNHFSGSVPVSFGGLVSLETMSLRGNRLNGSVPEELMGLKNLTVLDLSVNQFSGHVSAEIGNLSKLMVLNLSGNGFNGEIPSTLGNLFRLTTLDLSKQNLSGKLPYEISGLPSLQVIALQENKLSGVIPEGFSSLTSLKYVNLSSNEFSGYVPKSYGFLRSLAVLSLSNNRIMGMIPPEIGNCPDIEILELRSNYFEGPIPPDLSGLAHLKVLDLGKNNLTGALPVDISKCSELTVVLADHNELSGAIPGSLAKLSHLTVLDLSANQLSGEIPSNLSIIPGLVYFNVSGNKLEGEIPPMLGSKFNDSSVFASNQNLCGKPLDRKCEETDNRERNRSIVLIIIIAVGACLLALCCCFYISSLLRWRRRIKAAVSGEKKKSPRTSSGTSQGRSSTDTNGPKLVMFNAKITLAETIEATRQFDEENVLSRTRHGLVFKACYNDGMVLSIRKLPDGSLDENMFRKEAESLGKIRHRNLTVLRGYYAGPSDVRLLVYDYMPNGNLATLLQEASHLDGHVLNWPMRHLIALGIARGIAFLHQSSFIHGDIKPQNVLFDADFEAHLSDFGLDKLTVTNPVEASTSSTASVGTLGYVSPEAVLTGEPTKECDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQNGQIAELLEPGLFELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADIVFMLEGCRVGPDIPSSAETAQPSPV 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00710 1157 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 498 773 - -
Vimu11g00710 1157 MobiDBLite consensus disorder prediction 817 842 - -
Vimu11g00710 1157 MobiDBLite consensus disorder prediction 821 842 - -
Vimu11g00710 1157 SUPERFAMILY Protein kinase-like (PK-like) 845 1144 IPR011009 -
Vimu11g00710 1157 Pfam Leucine rich repeat N-terminal domain 56 93 IPR013210 -
Vimu11g00710 1157 Pfam Protein kinase domain 874 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00710 1157 Gene3D Ribonuclease Inhibitor 502 778 IPR032675 -
Vimu11g00710 1157 Gene3D Ribonuclease Inhibitor 285 501 IPR032675 -
Vimu11g00710 1157 Pfam Leucine Rich repeat 699 715 IPR001611 GO:0005515
Vimu11g00710 1157 SMART LRR_typ_2 507 531 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 459 483 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 119 143 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 285 309 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 213 237 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 651 675 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 387 411 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 699 723 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 167 191 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 603 627 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 579 602 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 435 458 IPR003591 -
Vimu11g00710 1157 SMART LRR_typ_2 555 578 IPR003591 -
Vimu11g00710 1157 SUPERFAMILY RNI-like 429 765 - -
Vimu11g00710 1157 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 939 1144 - -
Vimu11g00710 1157 ProSitePatterns Serine/Threonine protein kinases active-site signature. 983 995 IPR008271 GO:0004672|GO:0006468
Vimu11g00710 1157 SMART serkin_6 863 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00710 1157 Gene3D Ribonuclease Inhibitor 189 282 IPR032675 -
Vimu11g00710 1157 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 91 186 - -
Vimu11g00710 1157 Gene3D Transferase(Phosphotransferase) domain 1 939 1144 - -
Vimu11g00710 1157 Gene3D Phosphorylase Kinase; domain 1 826 938 - -
Vimu11g00710 1157 FunFam Putative LRR receptor-like serine/threonine-protein kinase 826 938 - -
Vimu11g00710 1157 Pfam Leucine rich repeat 556 616 IPR001611 GO:0005515
Vimu11g00710 1157 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515
Vimu11g00710 1157 SUPERFAMILY L domain-like 313 425 - -
Vimu11g00710 1157 FunFam Inactive leucine-rich repeat receptor-like protein kinase 191 280 - -
Vimu11g00710 1157 ProSiteProfiles Protein kinase domain profile. 863 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g00710 1157 FunFam Uncharacterized protein 285 497 - -
Vimu11g00710 1157 Gene3D Ribonuclease Inhibitor 51 188 IPR032675 -
Vimu11g00710 1157 SUPERFAMILY L domain-like 53 374 - -
Vimu11g00710 1157 FunFam Nuclear pore complex protein NUP107 53 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00710 Vimu-Chr11 7594831 7598304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00710 35 1157 Receptor kinase-like Gene Family AT4G36180 66.197 0.0 1452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vimu11g00710 Pkinase 9.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00710 - - vun:114175753 2094.7