Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00707 ATGCAAAACAACACACCTTCAAATTCAAACCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGTGCCGCCGCTATCGTTTTCTGCGCCGCCGACGAGGCCGCGCTGTGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGCGATGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGCGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAGAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGAAAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAGGTGAGACTAAAAGAGGACAAAATGCACTGCCGAAAATAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTCTGAGCCTGACGCCAGAACCAAATACTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGGTTAGGATGCCTGGAAAGTAA 615 0.4553 MQNNTPSNSNPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGEKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNHRMPLSLTPEPNTDEHAMMGTKMIDLNMKPQRIHEPTSNNQVRMPGK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00707 204 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vimu11g00707 204 Gene3D Classic Zinc Finger 16 110 - -
Vimu11g00707 204 MobiDBLite consensus disorder prediction 120 172 - -
Vimu11g00707 204 CDD Bbox1_BBX-like 19 62 - -
Vimu11g00707 204 ProSiteProfiles Zinc finger B-box type profile. 66 111 IPR000315 GO:0008270
Vimu11g00707 204 FunFam B-box zinc finger protein 19 17 107 - -
Vimu11g00707 204 SMART bboxneu5 66 111 IPR000315 GO:0008270
Vimu11g00707 204 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vimu11g00707 204 MobiDBLite consensus disorder prediction 185 204 - -
Vimu11g00707 204 CDD Bbox1_BBX-like 71 111 - -
Vimu11g00707 204 SUPERFAMILY B-box zinc-binding domain 63 102 - -
Vimu11g00707 204 PANTHER B-BOX ZINC FINGER PROTEIN 22 16 158 - -
Vimu11g00707 204 Pfam B-box zinc finger 18 57 IPR000315 GO:0008270
Vimu11g00707 204 Pfam B-box zinc finger 67 107 IPR000315 GO:0008270
Vimu11g00707 204 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00707 Vimu-Chr11 7559436 7561135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00707 16 197 C2C2-CO-like Transcription Factor Family AT4G38960 62.637 1.38e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vimu11g00707 zf-B_box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00707 - - vun:114176173 405.601