Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00699 CCCTCATTCAATGATGCTTTAACCAACACACCATTCTCTTTCAATTTCATCCCTCTTCTCTCTCAGGTAACAACTGCAATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGAAAAGACATGGCACTCAAACTCAGCCCCCAAGCGTACCCGGAGGACCTTAACATGCAAAACGTCACCTCCTGCGACGACTTCTTCGTCGACGACCTTCTCGACTTTTCGCTCCTCGAAAACGAAGAACCCGACCAACACAAACACACCCACCACTCAACCTCCGTTTCCCCTCGCCACGACAACCACCATATGTACAATTGCAACCACTCCTTCAACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGATTCTTTCTCCAAATACTCTCTTTCCTTCCCCGCAACCGTCACGCAGAGCCTCGCCGACAAACCTCCGGAACCGGGAAACGCCGGTTTTACTTTTAAAACCCTCGTTCCGGCCAAGCCAAGGAGCAAGCGAACCAGAACCGGGGTTCGGGTTTGGCCGCTGAGGTCACCCTCGTCTTTCACCGACATGTCGTCTCCCCGCAGCCCTTTGCTAATTTTCGCAGCCACGTCCAAAGAGCACCACCCGGAGGACAAGAGGGCGAAGAAACGGGCGGCGTCGGACGGGGGAGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACACCTCAATGGCGAACAGGACCGCTCGGGGCGAAGACCTTGTGCAATGCCTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTGCCGGAATATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTTTGGAGATGCGGCAGAAAAAGGAAGCGGGGCCTGGACCGGACACCGGTTCGCCAGCGTCGGTTCCCGGTTTTTGA 960 0.5458 PSFNDALTNTPFSFNFIPLLSQVTTAMECLEAVLKSSFRKDMALKLSPQAYPEDLNMQNVTSCDDFFVDDLLDFSLLENEEPDQHKHTHHSTSVSPRHDNHHMYNCNHSFNDNFNTELTLPAEEVADLEWVSHFIEDSFSKYSLSFPATVTQSLADKPPEPGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFTDMSSPRSPLLIFAATSKEHHPEDKRAKKRAASDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAGPGPDTGSPASVPGF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00699 319 MobiDBLite consensus disorder prediction 295 319 - -
Vimu11g00699 319 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Vimu11g00699 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 293 - -
Vimu11g00699 319 Gene3D - 229 304 IPR013088 GO:0006355|GO:0008270
Vimu11g00699 319 FunFam GATA transcription factor 226 310 - -
Vimu11g00699 319 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Vimu11g00699 319 Pfam GATA zinc finger 237 271 IPR000679 GO:0006355|GO:0043565
Vimu11g00699 319 CDD ZnF_GATA 236 284 IPR000679 GO:0006355|GO:0043565
Vimu11g00699 319 PANTHER GATA TRANSCRIPTION FACTOR 54 314 - -
Vimu11g00699 319 SMART GATA_3 231 285 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00699 Vimu-Chr11 7478193 7479222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00699 31 319 C2C2-Gata Transcription Factor Family AT5G66320 47.337 4.77e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu11g00699 GATA 4.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00699 - - pvu:PHAVU_003G258900g 584.334