Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00684 ATGGCGGGTTTGTTCTCATTAGGCGGAGGTAGAGGGACTAACAACAACCAGCAAGACAACACTACCAACAACAACGAGATTCCTGCAGCCGAGACCCTATTCTGGTATAGCAAAACCGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTCATGCCACAGCATGCGCGCCCTCTCCTGCAGCGAGATCTTTACTCCTCCGCTGTGGGACCCAGTCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCGATGCGCGCAGCCGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAAAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGAGTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTGCCCTCGTCAGTGATGCACACAGAAGGACTCGCAGTTTCTGTGATTGATCTGATGCTTTTCTTTCAAACCATGGATCATGTAGCTACATGCCTAATGTTGTTTCTTTTTTCTTTTTTCTTAATGTGTTGGAAACAAAATAAAGAAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATCTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCTTCCTTGTACTCCGCTCCCGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 1062 0.5056 MAGLFSLGGGRGTNNNQQDNTTNNNEIPAAETLFWYSKTDDVSSYRGFELWNQQQEQHVMPQHARPLLQRDLYSSAVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSVMHTEGLAVSVIDLMLFFQTMDHVATCLMLFLFSFFLMCWKQNKEGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYDYGPENSNNNNSNNSNNYMAGETSAGVAGAQPLNLTASGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00684 353 MobiDBLite consensus disorder prediction 144 179 - -
Vimu11g00684 353 Pfam Domain of unknown function (DUF702) 103 283 - -
Vimu11g00684 353 NCBIfam putative zinc finger domain, LRP1 type 105 147 IPR006510 -
Vimu11g00684 353 NCBIfam LRP1 C-terminal domain 234 282 IPR006511 -
Vimu11g00684 353 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 337 IPR007818 GO:0003700|GO:0006355
Vimu11g00684 353 MobiDBLite consensus disorder prediction 9 24 - -
Vimu11g00684 353 Coils Coil 147 170 - -
Vimu11g00684 353 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00684 Vimu-Chr11 7303102 7304674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00684 1 353 C2H2 Transcription Factor Family AT3G51060 40.385 1.40e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu11g00684 DUF702 3.6e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00684 - - gmx:100781981 414.075