Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g00681 ATGTCAACGGAAGCGCCCAAGCGCCATAAATGGCAGTGGGAGAACGCCACTGCGGGCGCTGCCGCCGGATTCGCCACCGTTGCCGTTATGTATCCCCTCGATGTTGTCCGCACTAGATTCCAAGTTAATGATGGTCGAGCTTCTCATCTTCCCAGTTACAAGAACACTGCTCACGCCGTTTTCACCATTGCGCGCTCTGAGGGATTAAGAGGGTTATATGCAGGCTTTCTTCCTGGGACTCTCGGGTCCACTATTTCGTGGGGTTTATATTTCTTTTTCTATGATAAAGCCAAACAAAGATATGCAAGGAACGGGGAAGGGAAATTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTGCCTGTGCACAAATCCTGTTTGGCTTGTAAAGACAAGATTGCAGCTTCAAAGTCCGCTTCATCAGATGCGACCATACTCTGGGCTTTATGATGCATTTAGGACCATAACGAGGGAAGAGGGATTTAGTGCACTTTACAGAGGCATTGTTCCTGGTCTACTTCTGAGCCTTGCAACGAACCTAATGTTTCGAGTTCGAACCTTGGGGGAACCTACTCCTACCATGGGGGAGTCCCGAATTTTCCAAGCCGCCAGGTTGTTGAACTTCGAAGCTATAGAGACTAGTCGGCAGGTCTCTCATGGTGCTATTCAGTTCACAGCATACGAGGAGCTCCGTAAAGTTATAATTGATTTTAAGAGTAAGAGAAGTACATTCCATAATCACAATCCTGATAAATTATTGCATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTGGCTGCAATACTGCTAACCTATCCATTTCAGGTTATGCGGTCTCGCTTGCAGCAAAGACCAAGTGGTGATGGGGTCCCAAGATATTTGGATACTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTATCCGGGGTTTTTACAAAGGAATTACCGCAAACCTCTTGAAAAATGCTCCTGCTTCTTCAATAACATTTATTGTTTATGAAAATGTTTTAAAATTGCTTAAACCGACTATAAGAAATGACTGA 1071 0.4519 MSTEAPKRHKWQWENATAGAAAGFATVAVMYPLDVVRTRFQVNDGRASHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGTLGSTISWGLYFFFYDKAKQRYARNGEGKLSPGLHLASAAEAGGLVCLCTNPVWLVKTRLQLQSPLHQMRPYSGLYDAFRTITREEGFSALYRGIVPGLLLSLATNLMFRVRTLGEPTPTMGESRIFQAARLLNFEAIETSRQVSHGAIQFTAYEELRKVIIDFKSKRSTFHNHNPDKLLHSVDYAVLGATSKLAAILLTYPFQVMRSRLQQRPSGDGVPRYLDTWHVVKETARFEGIRGFYKGITANLLKNAPASSITFIVYENVLKLLKPTIRND 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g00681 356 Gene3D Mitochondrial carrier domain 215 355 IPR023395 -
Vimu11g00681 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Vimu11g00681 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 259 348 IPR018108 -
Vimu11g00681 356 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 182 IPR044712 GO:0006862|GO:0055085
Vimu11g00681 356 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Vimu11g00681 356 Pfam Mitochondrial carrier protein 109 185 IPR018108 -
Vimu11g00681 356 Pfam Mitochondrial carrier protein 11 103 IPR018108 -
Vimu11g00681 356 Pfam Mitochondrial carrier protein 262 350 IPR018108 -
Vimu11g00681 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vimu11g00681 356 Gene3D Mitochondrial carrier domain 1 193 IPR023395 -
Vimu11g00681 356 SUPERFAMILY Mitochondrial carrier 221 344 IPR023395 -
Vimu11g00681 356 SUPERFAMILY Mitochondrial carrier 12 182 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g00681 Vimu-Chr11 7239140 7246290 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g00681 32 349 Chloroplast and Mitochondria Gene Families AT2G47490 32.308 3.32e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g00681 K15115 - gmx:100809599 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g00681 11 7239140 7246290 Vimu11g00681 11 7239140 7246290 ECH